The methanol-extractable, nonprotein chromophore of the antitumor, protein antibiotic neocarzinostatin (NCS) has at least the full activity of the parent compound in inhibiting DNA synthesis and growth of HeLa cells and in causing DNA strand breaks in vivo and in vitro. In vitro DNA strand scission by the chromophore is markedly stimulated by 2-mercaptoethanol and is inhibited by guanidine hydrochloride and a-tocopherol. By high-pressure liquid chromatography, this activity has been localized to fractions eluting at >90% methanol and having fluorescence emission at 420 nm (excitation at 340 nm). The apo-protein of NCS is inactive by itself but complexes with the chromophore so as to regulate its availability during the in vitro reaction. In DNA strand scission the chromophore acts rapidly at both 0 and 370C, whereas native and reconstituted NCS are inactive at 00C and slowly active at 370C.Complex formation with apo-NCS stabilizes the chromophore.Reconstitution of NCS (pI 3.3) from chromophore and apo-protein (pI 3.2) was shown by both activity studies and isoelectric focusing on polyacrylamide gels. "Pre-NCS," the biosynthetic precursor of NCS, is identical to apo-NCS in amino acid composition, spectral properties, isoelectric focusing on polyacrylamide gels, and ability to complex with isolated chromophore to form material with all the properties of native NCS. Neocarzinostatin (NCS), an antitumor antibiotic, is a singlechain, acidic protein of molecular weight 10,700 with two disulfide bonds; its amino acid sequence is known (1). Considerable evidence has been presented to indicate that cellular DNA is the major target in the action of NCS and that the drug causes DNA strand breakage both in vivo and in vitro (reviewed in ref.2). NCS introduces single-strand breaks almost exclusively at thymidylate and adenylate residues in DNA in vitro (3-5) in a reaction greatly stimulated by a sulfhydryl compound (3, 6-9) and dependent on oxygen (9-11). Evidence for the existence of an active, labile form of NCS that causes single-strand breaks in linear and supercoiled DNA has been presented (9, 12). With the recent demonstration that NCS contains nonprotein, chromophoric material that has UV-visible absorption above 300 nm and fluorescence emission at 420 nm and 490 nm and that can be separated from the protein (13), the question arises as to its possible role in NCS action. Indirect evidence for such a role comes from our finding that NCS protein from which the chromophore(s) has been removed or destroyed by various procedures has lost virtually all of its biological activity (12,14).In this paper we offer direct evidence that the isolated (15) and has the same amino acid composition as NCS, although deamidation of the asparagine in position 83 has been reported (16). The UV-visible absorption and fluorescence spectra of the "pre-NCS" were found to be identical to those reported for apo-NCS (13,14). Comparison of the biological properties of NCS and macromomycin has been reported (12, 17). The assays for NCS-i...