The dynamics of intestinal colonization with enterococcal clones in intensive-care-unit (ICU) patients was evaluated. Eight patients admitted directly to the neurosurgical ICU at the Ramón y Cajal University Hospital (Madrid, Spain) from the community and with no overlapping stay during a 10-month period in 2006 were studied. Rectal swab specimens were collected on admission and daily until the patients were discharged. Clonality was determined by pulsed-field gel electrophoresis and multilocus sequence typing. Clonal colonization dynamics were estimated by using two new parameters: the clonal diversity per patient per day (CDPD) and the clonal persistence ratio (CPR). Enterococcus faecalis isolates (n ؍ 123) and Enterococcus faecium isolates (n ؍ 66) were resolved into 13 and 15 clones, respectively. The CDPD of E. faecalis steadily increased during admission, and E. faecalis showed a higher (P ؍ 0.001) CPR value than E. faecium (0.86 and 0.42, respectively). E. faecium, with the exception of an ampicillin-resistant clone belonging to clonal complex 17, frequently appeared as a short-term colonizer, even though the E. faecalis clones had significantly (P ؍ 0.03) more days under antibiotic exposure than E. faecium (77.5 and 65 days/100 colonization days, respectively). E. faecalis had a longer persistence than E. faecium, except for the CC17 ampicillin-resistant clone, and E. faecalis showed a cumulative increase in CDPD, whereas E. faecium did not. CDPD and CPR were useful for measuring the dynamics of intestinal colonization with enterococcal clones.Intensive care units (ICUs) are hospital compartments that present the highest frequencies of nosocomial infection with multiresistant bacteria due to the combination of the presence of seriously ill patients, frequent events of cross transmission, and high levels of antibiotic pressure. Enterococci have emerged as a significant cause of nosocomial infections, causing about 7% of infections among ICU patients (28). Traditionally, enterococcal infections were thought to be of endogenous origin, but modern typing systems have permitted the identification of genotypes that are well adapted to the hospital setting and that are frequently cross transmitted. Population structure studies based on multilocus sequence typing (MLST) data for Enterococcus faecalis (25) and Enterococcus faecium (14), the enterococcal species most often isolated from clinical infections, have revealed the existence of particular clonal complexes (CCs) that are frequently selected in the hospital environment. These CCs have been named high-risk CCs (HrCCs), as they are the cause of most enterococcal infections and hospital outbreaks all over the world (18).Bacterial persistence in hosts constitutes an important factor driving both bacterial transmission and infection. Different studies that have focused on the longitudinal follow-up of patients colonized with multiresistant enterococci, especially vancomycin-resistant isolates, demonstrated the prolonged persistence of vancomycin-resista...