Refined one-dimensional, 1D, models are used to carry out free vibration analysis of civil engineering structures affected by local damages. The Carrera Unified Formulation (CUF) provides higher-order structural models to be formulated in a compact and, eventually, hierarchical manner. In the domain of the CUF, refined 1D models characterized by three-dimensional capabilities can be realized by using various function expansions of the generalized displacement field over the cross-section. Recently, a component-wise (CW) approach was introduced by employing CUF. CW gives a detailed physical description of multi-component structures since each component can be modeled with its geometrical and mechanical characteristics; namely, no reference surfaces and axes as well as no homogenization techniques, are employed. In the present work, combinations of quadratic Lagrange elements are used to describe the beam theory kinematics. This approach allows to analyze with high accuracy complex civil structures, such as truss structures, industrial buildings and a multifloor building. In this context, damage scenarios are introduced with no loss of accuracy in the mathematical formulation by deteriorating the single component of the structure. Effect of damages are, thus, evaluated by free vibration analyses.