A non-disruptive method is described with which DNA polymerases can be detected in homogeneous preparations and unfractionated cell extracts after electrophoresis in nondenaturing polyacrylamide gradient gels. The technique involves diffusion of DNA polymerase activity into an overlay assay agarose gel, the synthesis of radioactive DNA, removal of excess substrates and autoradiography. Cell extracts from a variety of organisms were studied using this method. The activity from Escherichia coli crude extracts migrated in a postition corresponding to a higher molecular mass than did purified preparations of DNA polymerase I. DNA polymerases of higher organisms generally migrated in positions corresponding to 400 -900 kDa, in some cases, close to 200 kDA.Recent analysis of purified samples has shown that replicating DNA polymerases (type CI in eucaryotes and type 111 in Escherichia coli) are in fact multiprotein complexes [l -1 I]. Because such complexes are delicate, they frequently do not survive purification, and their occurrence is often not detected. A non-disruptive method is needed that allows detection of such complexes in cell extracts and during purification. A previous approach along these lines was an electrophoretic assay in nondenaturing polyacrylamide gels containing activated calf thymus DNA [12].DNA polymerase activity has also been assayed after electrophoresis in denaturing SDS/polyacrylamide gels [13] and molecular masses of single polypeptides in crude preparations could be estimated. Although innovative, this method cannot be used for detection of complexes.We present here a technique which allows non-disruptive detection of DNA polymerase activity in polyacrylamide gels. Separation is achieved according to molecular masses of proteins by electrophoresis in polyacrylamide gradient gels under nondenaturing conditions according to established techniques [14-171. The method was applied to unfractionated extracts from bacteria, fungi, plant and mammalian cells.
EXPERIMENTAL PROCEDURE
MaterialsCells of Escherichia coli MRE 600 were purchased from Merck (Darmstadt). E. coli superproducing strain W3110 carrying the temperature-inducible prophage NM879 polACorrespondence to