The active site of the [FeFe] hydrogenase (HydA1), the H-cluster, is a 6-Fe cofactor that contains CO and CN ligands. It undergoes several different oxidation and protonation state changes in its catalytic cycle to metabolize H. Among them, the well-known H state and the recently identified H state are thought to be directly involved in H activation and evolution, and they are both EPR active with net spin S = 1/2. Herein, we report the pulse electronic paramagnetic spectroscopic investigation of these two catalytic states in Chlamydomonas reinhardtii HydA1 ( CrHydA1). Using an in vitro biosynthetic maturation approach, we site-specifically installed C into the CO or CN ligands and Fe into the [2Fe] subcluster of the H-cluster in order to measure the hyperfine couplings to these magnetic nuclei. For H, we measured C hyperfine couplings (CO a of 25.5, 5.8, and 4.5 MHz) corresponding to all three CO ligands in the H-cluster. We also observed two Fe hyperfine couplings (Fe a of ∼17 and 5.7 MHz) arising from the two Fe atoms in the [2Fe] subcluster. For H, we only observed two distinct CO hyperfine interactions (CO a of 0.16 and 0.08 MHz) and only one for CN (CN a of 0.16 MHz); the couplings to the CO/CN on the distal Fe of [2Fe] may be too small to detect. We also observed a very small (<0.3 MHz) Fe HFI from the labeled [2Fe] subcluster and four Fe HFI from the labeled [4Fe-4S] subcluster (Fe a of 7.2, 16.6, 28.2, and 35.3 MHz). These hyperfine coupling constants are consistent with the previously proposed electronic structure of the H-cluster at both H and H states and provide a basis for more detailed analysis.