Background
Silencing mutant huntingtin mRNA by RNA interference (RNAi) is a
therapeutic strategy for Huntington’s disease. RNAi induces specific
endonucleolytic cleavage of the target HTT mRNA, followed
by exonucleolytic processing of the cleaved mRNA fragments.
Objectives
We investigated the clearance of huntingtin mRNA cleavage products
following RNAi, to find if particular huntingtin mRNA sequences persist. We
especially wanted to find out if the expanded CAG increased production of a
toxic mRNA species by impeding degradation of human mutant huntingtin exon 1
mRNA.
Methods
Mice expressing the human mutant HTT transgene with
128 CAG repeats (YAC128 mice) were injected in the striatum with
self-complementary AAV9 vectors carrying a miRNA targeting exon 48 of
huntingtin mRNA (scAAV-U6-miRNA-HTT-GFP). Transgenic
huntingtin mRNA levels were measured in striatal lysates after two weeks.
For qPCR, we used species specific primer-probe combinations that together
spanned 6 positions along the open reading frame and untranslated regions of
the human huntingtin mRNA. Knockdown was also measured in the liver
following tail vein injection.
Results
Two weeks after intrastriatal administration of
scAAV9-U6-miRNA-HTT-GFP, we measured transgenic mutant
huntingtin in striatum using probes targeting six different sites along the
huntingtin mRNA. Real time PCR showed a reduction of 29% to
36% in human HTT. There was no significant
difference in knockdown measured at any of the six sites, including exon 1.
In liver, we observed a more pronounced HTT mRNA knockdown
of 70% to 76% relative to the untreated mice, and there were
also no significant differences among sites.
Conclusions
Our results demonstrate that degradation is equally distributed
across the human mutant huntingtin mRNA following RNAi-induced cleavage.