Remodeling of dendritic spines through regulation of actin dynamics is a key event in activity-dependent structural plasticity. However, the molecular mechanism underlying this process is poorly understood. Here, we show that activity-dependent modulation of Abl interactor 1-Ca 2ϩ /calmodulin-dependent kinase II␣ (Abi1-CaMKII␣) interaction, and thereby their activity, is important for regulation of spine morphology in cultured rat hippocampal neurons. Abi1 interacts with CaMKII␣ at resting conditions through Abi1's tSNARE (target membrane-associated SNARE), which harbors striking homology with CaMKII␣ regulatory domain. The interaction of the two proteins, Abi1 and CaMKII␣, results in their simultaneous inhibition, inhibition of CaMKII␣ activity, and also inhibition of Abi1-dependent Rac activation. Their functional impediment is released when they dissociate from each other by calmodulin binding through glutamate receptor activation. Before dissociation, Abi1 is phosphorylated by CaMKII␣ at serine 88, which may involve in regulation of Rac activation and spine maturation. Our results suggest that modulation of the interaction between Abi1 and CaMKII␣, through the glutamate receptor pathway, may be a molecular mechanism underlying activity-regulated structural plasticity in rat hippocamapal neurons.