Crosscutting Frameworks are a type of Aspect-Oriented Framework, which includes only one crosscutting concern, such as persistence, distribution or security. This type of framework is currently being researched in-depth, however little attention has been given to the version control of these frameworks and of the applications developed with their support. Version control concerning the development based on crosscutting frameworks is more complex than in traditional development. Moreover, it is more complex than in the development based on traditional frameworks, which require suitable techniques to control the evolution of both the frameworks and developed applications. Thus, in this paper we present guidelines and a tool which aims to control the versions of Crosscutting Frameworks, as well as the applications which are developed with their support.