Autophagy, a lysosomal degradation pathway, plays a crucial role in
cellular homeostasis, development, immunity, tumor suppression, metabolism,
prevention of neurodegeneration and lifespan extension. Thus, pharmacological
stimulation of autophagy may be an effective approach for preventing or treating
certain human diseases and/or aging. We sought to establish a method for
developing new chemical compounds that specifically induce autophagy. To do
this, we developed two assays to identify compounds that target a key regulatory
node of autophagy induction – specifically, the binding of Bcl-2 (a
negative regulator of autophagy) to Beclin 1 (an allosteric modulator of the
Beclin 1/VPS34 lipid kinase complex that functions in autophagy initiation).
These assays use either a split-luciferase assay to measure Beclin 1/Bcl-2
binding in cells or an AlphaLISA assay to directly measure direct Beclin 1/Bcl-2
binding in vitro. We screened two different chemical compound
libraries, comprising ~300K compounds, to identify small molecules that
disrupt Beclin 1/Bcl-2 binding and induce autophagy. Three novel compounds were
identified that directly inhibit Beclin 1/Bcl-2 interaction with an
IC50 in the micromolar range and increase autophagic flux. These
compounds do not demonstrate significant cytotoxicity and they exert selectivity
for disruption of Bcl-2 binding to the BH3 domain of Beclin 1 compared to the
BH3 domain of the pro-apoptotic Bcl-2 family members, Bax and Bim. Thus, we have
identified candidate molecules that serve as lead templates for developing
potent and selective Beclin 1/Bcl-2 inhibitors that may be clinically useful as
autophagy-inducing agents.