The cell extract protein content of acetate-and methanol-grown Methanosarcina thermophila TM-1 was examined by two-dimensional polyacrylamide gel electrophoresis. More than 100 mutually exclusive spots were present in acetate-and methanol-grown cells. Spots corresponding to acetate kinase, phosphotransacetylase, and the five subunits of the carbon monoxide dehydrogenase complex were identified in acetate-grown cells. Activities of formylmethanofuran dehydrogenase, formylmethanofuran:tetrahydromethanopterin formyltransferase, 5,10-methenyltetrahydromethanopterin cyclohydrolase, methylene tetrahydromethanopterin:coenzyme F420 oxidoreductase, formate dehydrogenase, and carbonic anhydrase were examined in acetate-and methanol-grown Methanosarcina thermnophila. Levels of formyltransferase in either acetate-or methanol-grown Methanosarcina thermophila were approximately half the levels detected in H2-CO2-grown Methanobacterium thermoautotrophicum. All other enzyme activities were significantly lower in acetate-and methanol-grown Methanosarcina thermophila.Of the known methanogens, Methanosarcina species are the most catabolically diverse and are therefore amenable to the study of catabolite influence on protein synthesis. Methanosarcina thermophila TM-1 is capable of using acetate, methanol, or methylated amines as growth substrates (28). Except for the reductive demethylation of methyl coenzyme M, the pathways for utilization of acetate or methanol by the methanogenic archaeobacteria (see Fig. 3) (23, 25) are distinct from the pathway for reduction of carbon dioxide (20). When acetate is used, acetate kinase and phosphotransacetylase catalyze the activation of acetate to acetyl coenzyme A prior to the proposed cleavage of the carbon-carbon bond by the carbon monoxide dehydrogenase (CODH) complex (23). The levels of these enzymes are severalfold greater in acetate-grown cells than they are in methanol-grown cells (1,15,23). Electrons for the demethylation of methyl coenzyme M derive from the oxidation of methanol (see reaction 5 in Fig. 3) or the carbonyl group of acetate (see reaction 2 in Fig. 3). The presence of formylmethanofuran dehydrogenase activity in extracts of methanol-grown Methanosarcina barkeri is consistent with the proposal that methanol is oxidized by a reversal of the carbon dioxide reduction pathway (5). Growth of Methanosarcina thermophila TM-1 is supported by acetate or methanol, but the organism reduces carbon dioxide to methane only after an extended adaptation period, and growth is poor (28). Here we present results of two-dimensional (2-D) gel electrophoretic analyses of whole-cell proteins which estimate the extent of regulation by the growth substrate and report the activities of the enzymes that catalyze one-carbon redox reactions in extracts of acetate-and methanol-grown cells.