Activation of the initiator caspase-9 is essential for induction of apoptosis by developmental signals, oncogenic transformation, and genotoxic stress. The c-Abl tyrosine kinase is also involved in the apoptotic response to DNA damage. The present results demonstrate that c-Abl binds directly to caspase-9. We show that cAbl phosphorylates caspase-9 on Tyr-153 in vitro and in cells treated with DNA damaging agents. Moreover, inhibition of c-Abl with STI571 blocked DNA damage-induced autoprocessing of caspase-9 to the p35 subunit and activation of caspase-3. Caspase-9(Y153F) also attenuated DNA damage-induced processing of caspase-9 to p35, activation of caspase-3, and apoptosis. These findings indicate that caspase-9 autoprocessing is regulated by c-Abl in the apoptotic response to genotoxic stress.Caspase-9 is the initiator caspase of the apoptosome, an oligomeric complex that controls the intrinsic apoptotic pathway. Formation of the apoptosome is induced by release of mitochondrial cytochrome c into the cytosol. Cytochrome c associates with Apaf-1 and thereby promotes its oligomerization and recruitment of caspase-9 (1-3). Binding to Apaf-1 increases activity of the caspase-9 protease and autocleavage of the p46 pro-caspase-9 at Asp-315 to yield p35 and p12 subunits (4 -6). Caspase-9 activation requires interaction with the Apaf-1 caspase recruitment domain, an increase in local concentrations of caspase-9, and the formation of caspase-9 dimers (7,8). Following autoprocessing in the apoptosome, caspase-9 cleaves and activates caspase-3. In turn, caspase-3 directs feedback cleavage of caspase-9 at Asp-330 to generate p37 and p10 subunits (4, 9). The caspase-9 p12, and not the p10, subunit contains four N-terminal amino acids that bind to the third baculoviral repeat of the X-linked inhibitor of apoptosis (10), which maintains caspase-9 in the inactive monomer conformation (11, 12) and functions as a tether for caspase-3 (13, 14). Other studies have demonstrated that caspase-9 activity is inhibited by Akt-mediated phosphorylation on and by extracellular signal-regulated kinase-mediated phosphorylation on . However, it is not known whether phosphorylation of caspase-9 contributes to autocleavage of this important apoptotic initiator.The c-Abl tyrosine kinase is activated in the response of cells to genotoxic stress (17). The product of the gene mutated in ataxia telangiectasia is responsible in part for c-Abl activation (18,19). Other work has demonstrated that nuclear c-Abl interacts with the DNA-dependent protein kinase (DNA-PK)-Ku complex (20,21). Phosphorylation of c-Abl by the catalytic subunit DNA-PKcs stimulates c-Abl activity (20). Activation of c-Abl by DNA damage or inhibition of DNA replication contributes to the induction of apoptosis by mechanisms in part dependent on the p53 tumor suppressor and its homolog p73 (22-26). c-Abl also contributes to DNA damage-induced activation of the mitogen-activated protein kinase/extracellular signal-regulated kinase kinase (MEK) kinase-1, c-Jun N-terminal kinase,...