The European Commission promotes new technologies and data generated by the Copernicus Programme. These technologies are intended to improve the management of the Common Agricultural Policy aid, implement new monitoring controls to replace on-the-spot checks, and apply up to 100% of the applications continuously for an agricultural year. This paper presents a generic methodology developed for implementing monitoring controls. To achieve this, the dataset provided by the Sentinel-2 time series is transformed into information through the combination of classifications with machine learning using random forest and remote sensing-based biophysical indices. This work focuses on monitoring the helpline associated with rice cultivation, using 13 Sentinel-2 images whose grouping and characteristics change depending on the event or landmark being sought. Moreover, the functionality to check, before harvesting the crop, that the area declared is equal to the area cultivated is added. The 2020 results are around 96% for most of the metrics analysed, demonstrating the potential of Sentinel-2 for controlling subsidies, particularly for rice. After the quality assessment, the hit rate is 98%. The methodology is transformed into a tool for regular use to improve decision making by determining which declarants comply with the crop-specific aid obligations, contributing to optimising the administrations’ resources and a fairer distribution of funds.