ABSTRACT13C NMR spectra of Iyophilized dark-adapted [14-13C]retinyl-labeled bacteriorhodopsin show a large anomalous upfield shift for the 13C-14 resonance assigned to the 13-cis isomer, relative to both the all-trans isomer and model compounds. We attribute this to the so-called y effect, which results from a steric interaction between the C-14 retinal proton and the protons on the e CH2 of the lysine. As a consequence of this observation, we infer that dark-adapted bacteriorhodopsin is composed of a mixture of all-trans,15-anti (trans or E) and 13-cis,15-syn (cis or Z) isomers. These occur in an approximate 4:6 ratio and are commonly identified as bRm and bR54. This conclusion is based on an examination of the isotropic and anisotropic chemical shifts and a comparison with 13C shifts of the carbons adjacent to the C=N linkage in protonated ketinines. Other possible origins for the anomalous shift are examined and shown to be insufficient to account for either the size of the shift or the nature of the shift tensor. We discuss the consequences of this finding for the structure and photochemistry of bacteriorhodopsin.Bacteriorhodopsin (bR), the single protein of the purple membrane (PM) of Halobacterium halobium (1), has been the subject of considerable experimental scrutiny for some time. Like rhodopsin (2), it contains as its chromophore the polyene aldehyde retinal, connected via a Schiff base linkage to the E-amino group of a lysine side chain (3). Although bR appears to resemble visual pigments (4) (14), the configuration of the C=-N Schiff base linkage in bR has not been considered. In addition, the interesting possibility that isomerization about this bond might occur during the photocycle has been largely overlooked. The inattention to this important question can be attributed in part to the absence of an experimental means to discriminate definitively between syn and anti isomers in bR. In a recent paper (15) we demonstrated that high-resolution solid-state 3C NMR is a potent means of establishing configuration about C=C bonds in bR. Here, we present evidence that it is equally effective in determining the C=N bond configuration and evinces that dark-adapted bR contains alltrans,15-anti and 13-cis,15-syn isomers in an approximately 4:6 ratio. The implications of this finding for both the structure of the chromophore and the bR photocycle will also be discussed.
MATERIALS AND METHODS13C-14-labeled retinal was prepared by the method of ref. 16 and incorporated into white membrane as described (8, 15). The reconstituted PM was then lyophilized at 0.1 mm Hg (1 mm Hg = 133 Pa) and packed into a Kel-F rotor of the Andrew-Beams design (17). 13C magic-angle sample spinning (MASS) spectra were obtained at various spinning frequencies between 1.9 and 3.2 kHz, with a 13C frequency of 79.9 MHz. Typically, (,)1/21r) = 50 kHz was used for cross-polarization. Subsequently, the magnetization was sampled in the presence of 1H decoupling fields of 125 kHz. Usually, 15,000 transients were accumulated, with a recycle de...