A study on phylogeny and biogeography of mahseer species (Pisces: Cyprinidae) using sequences of three mitochondrial DNA gene regions

Nguyen, Thuy Thi Thu; Na-Nakorn, Uthairat; Sukmanomon, Srijanya; Chen, Ziming

doi:10.1016/j.ympev.2008.01.006

Cited by 51 publications

(52 citation statements)

References 16 publications

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“…Nguyen and colleagues [67], for example, have highlighted that species of the cyprinid genus Tor widely distributed in SEA, showed contrasting patterns of diversity depending on the proximity to Sundaland as species widely distributed in Sundaland exhibits high levels of cryptic diversity and sister-lineages with trans-island relationships. In Tor douronensis, in particular, they observed four mitochondrial lineages with allopatric distributions across Peninsular Malaysia, Borneo and Sumatra.…”

Section: The Sundaland Ichthyofaunamentioning

confidence: 99%

“…Species richness in Indo-Pacific reef fishes exhibits a marked heterogeneity following a gradient that peaks in the Philippines and Indonesia and decreases toward the west and the east [102][103][104][105][106]. The origin of this gradient of diversity has been intensively debated during the last two decades as several mechanisms have been proposed to account for previously described based on mitochondrial sequences [67,125].…”

Section: Euryhaline and Diadromous Lineages With Regional Distributionmentioning

confidence: 99%

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DNA Barcoding Indonesian freshwater fishes: challenges and prospects

Hubert¹,

Kadarusman²,

Wibowo³

et al. 2015

DNA Barcodes

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With 1172 native species, the Indonesian ichthyofauna is among the world’s most speciose. Despite that the inventory of the Indonesian ichthyofauna started during the eighteen century, the numerous species descriptions during the last decades highlight that the taxonomic knowledge is still fragmentary. Meanwhile, the fast increase of anthropogenic perturbations during the last decades is posing serious threats to Indonesian biodiversity. Indonesia, however, is one of the major sources of export for the international ornamental trade and home of several species of high value in aquaculture. The development of new tools for species identification is urgently needed to improve the sustainability of the exploitation of the Indonesian ichthyofauna. With the aim to build comprehensive DNA barcode libraries, the co-authors have started a collective effort to DNA barcode all Indonesian freshwater fishes. The aims of this review are: (1) to produce an overview of the ichthyological researches conducted so far in Indonesia, (2) to present an updated checklist of the freshwater fishes reported to date from Indonesia’s inland waters, (3) to highlight the challenges associated with its conservation and management, (4) to present the benefits of developing comprehensive DNA barcode reference libraries for the conservation of the Indonesian ichthyofauna.

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Section: The Sundaland Ichthyofaunamentioning

confidence: 99%

Section: Euryhaline and Diadromous Lineages With Regional Distributionmentioning

confidence: 99%

DNA Barcoding Indonesian freshwater fishes: challenges and prospects

Hubert¹,

Kadarusman²,

Wibowo³

et al. 2015

DNA Barcodes

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“…Folifer, Naziritor, Neolissochilus, Parator and Tor Froese and Pauly, 2015; 61 Eschmeyer, 2015); though fishes of the genus Tor are widely recognized as being the 'true mahseer' 62 (Nguyen et al, 2008). These fishes are widely distributed throughout Asia in the rivers of 63 Afghanistan,Pakistan,India,Sri Lanka,Nepal,Bhutan,Myanmar,Thailand,China,Laos,Cambodia,64 Vietnam, Indonesia and Malaysia (Ng, 2004;Nguyen et al, 2008;see ESM 1).…”

mentioning

confidence: 99%

“…These fishes are widely distributed throughout Asia in the rivers of 63 Afghanistan,Pakistan,India,Sri Lanka,Nepal,Bhutan,Myanmar,Thailand,China,Laos,Cambodia,64 Vietnam, Indonesia and Malaysia (Ng, 2004;Nguyen et al, 2008;see ESM 1). They are popular 65 icons of economic and recreational interest in many of these countries and are generally of 66 conservation concern due to anthropogenic threats including degradation, fragmentation and loss of 67 habitats, and overfishing (Raghavan et al, 2011;Pinder and Raghavan, 2013;Pinder et al, 2015; 68 Pinder et al, in press).…”

mentioning

confidence: 99%

Disentangling the Taxonomy of the Mahseers (Tor spp.) of Malaysia: An Integrated Approach Using Morphology, Genetics and Historical Records

Walton

Gan

Raghavan

et al. 2016

Reviews in Fisheries Science & Aquaculture

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“…As such, those who want to culture this species will have to bear with the risk of getting seed stock that comprises the mixture of these two species. Therefore, a more effective method for species identification by using DNA markers such as the mitochondria DNA (mtDNA) sequences and microsatellte markers are seen as potential in solving this problem (Nguyen et al, 2006a;Nguyen et al, 2006b;Nguyen et al, 2008;Nguyen, 2008).…”

Section: Tor Spp (T Tambroides and T Deuronensis)mentioning

confidence: 99%