Measurements of inherent optical properties (IOP) were conducted over bottoms with different substrates by use of a sampling package mounted on and operated by a SCUBA diver. It was found that in areas of low ambient currents the distribution of IOP varies with bottom type in (1) its value relative to a nearby bottom of different type, (2) its vertical gradient, and (3) its variability. This implies that radiative transfer modeling in shallow environments may need to include, besides the bottom characteristics, the bottom effect on in-water IOP. In tidally flushed shallow banks, vertical and horizontal gradients over scales of O(1, 10 m), respectively, are as large as temporal gradients over scales of minutes and cannot be separated in our measurements. However, bottom-substraterelated processes over the banks result in gradients over large horizontal spatial scales and tidal timescales. The distribution of IOP is consistent with several biogeochemical processes that may be active at a given bottom substrate and suggest that optical measurements may provide a useful tool to infer and quantify bulk rates of biogeochemical processes.The classic forward problem in ocean optics is the calculation of the distribution of radiance in space given the optical properties of the medium (the inherent optical properties [IOP]; Preisendorfer 1976) and appropriate boundary conditions. To solve this ''forward'' problem, we need to know the details of the light source or sources (e.g., the solar spectrum and its direct and diffuse light just above the ocean), transmission through the boundaries of the domain (e.g., a wave-modulated air-ocean interface), and the optical properties of the medium. In the ocean, photons interact with the water molecules and with dissolved and particulate material within the water. These constituents determine the IOP of any given water mass. In shallow waters, an additional complexity comes from the existence of a bottom boundary, which interacts with light (through absorption and reflection).The forward problem is of importance for interpretation of remotely sensed ocean color in shallow areas (e.g., Lee et al. 1999;Carder et al. 2003) and for systems designed to image the bottom (e.g., for classification of bottom substrate and target recognition; McLean et al. 1995). In order to understand the distribution of IOP in space and time, we need to understand their relationship to processes occurring in the ocean as well as processes associated with the bottom.The ocean bottom affects light propagation not only through its own optical properties; the bottom substrate and
AcknowledgmentsThis research was sponsored by the Coastal Benthic Optical Properties initiative of the Office of Naval Research. We thank R. Wheatcroft for providing us his current velocity measurements. Discussions with R. Zimmerman and D. Burdige initiated the porewater sampling. We thank P. Hill for an insightful review of an earlier version of this manuscript and J. Washburn and F. Baratange for assistance in sampling and i...