The 5'-flanking region of the rat insulin II gene (-448 to +50) is sufficient for tissue-specific expression. To further determine the tissue-specific cis-acting element(s), important sequences defined by linker-scanning mutagenesis were placed upstream of a heterologous promoter and transfected into insulin-producing and -nonproducing cells. Rat insulin promoter element 3 (RIPE3), which spans from -125 to -86, was shown to confer jI-cell-specific expression in either orientation. However, two subregions of RIPE3, RIPE3a and RIPE3b (defined by linker-scanning mutations), displayed only marginal activities. These results suggest that the two subregions cooperate to confer tissue specificity, presumably via their cognate binding factors.The insulin gene is expressed exclusively in pancreatic I cells in normal adults and is therefore a good model system for the study of tissue-specific gene expression. Previous studies have shown that less than 600 base pairs (bp) of the 5'-flanking sequences are sufficient for tissue specificity of the insulin gene in both cultured cells (6, 23) and transgenic mice (10). Therefore, the interaction between upstream sequence elements and trans-acting factors is important for regulation of insulin gene expression. Upstream flanking sequences of the mammalian insulin genes are homologous up to 500 bp (22). Furthermore, interspecies gene transfer experiments indicate that the molecular mechanism underlying the tissue specificity of the insulin gene is conserved among mammals.There are two nonallelic insulin genes in rats, the rat insulin I (rInsI) and rat insulin II (rInsII) genes (3, 23). These two genes have more than 80% sequence similarity in both the coding and flanking sequences, and they are coordinately expressed (8). The rInslI gene is more similar in structure than the rInsI gene to the other mammalian insulin genes, and it is proposed that rlnsl gene was duplicated from the ancestral rInsIl gene (21). To better define which sequences within the 5'-flanking region of the rInsIl gene are important for gene activity, linker-scanning (LS) mutagenesis was carried out in our laboratory (4). Mutation of seven regions (referred to as the rat insulin promoter elements [RIPEs]) resulted in significant decreases in gene activity, suggesting that the insulin gene control region is composed of several functional domains or cis elements. These cis elements may cooperate through their cognate trans-acting factors to achieve high levels of transcription. One of the trans-acting factor is the COUP (chicken ovalbumin upstream promoter) transcription factor (18,19), which binds to RIPE1 (-53 to -46) and is likely to play an important role in insulin promoter function (11). Interestingly, the COUP transcription factor contacts the insulin and ovalbumin promoter quite differently (12), the physiological significance of which remains unknown.These mutagenesis results, however, did not define the control element(s) for tissue specificity. It is possible that one or a combination of the LS-define...