Abstract:SUMMARYThis work presents the architecture of PROSIDIS, a special purpose processor designed to search for the occurrence of substrings similar to a given 'template string' within a proteome. Similarity is determined by means of a weighting matrix which measures the degree of similarity between any two amino acids.The paper recalls the basis of the PHG (Parallel Hardware Generator) tool, developed in the framework of the HADES project (Hardware Design for Scientific Applications). Through PHG it is possible to… Show more
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