FOXP3 is a key transcription factor expressed by regulatory T cells (Treg cells). However, differences in staining and analysis protocols have led to conflicting results. Moreover, the transient upregulation of FOXP3 that follows activation in non-Treg cells renders the interpretation of FOXP3 data more difficult in humans than in mice. Human peripheral blood mononuclear cells (PBMCs), isolated CD25 2 or CD25 1 CD4 1 T cells were stained with three different anti-FOXP3 clones (PCH101, 206D, and 259D) alone or in combination, and using different permeabilization methods. REGULATORY T cells (Treg cells) play a major role in the homeostasis of the immune system (1-5). Treg cells are a subpopulation of CD4 1 T cells that represent $1-10% of circulating CD4 1 T cells (6). They were first characterized by the constitutive expression of the IL-2Ra chain (CD25) (1). More recently, it was shown that they usually express low levels of the IL-7Ra chain (CD127) (7,8). The transcription factor FOXP3 (Forkhead box P3) plays a crucial role in Treg differentiation, function, and biology in both mice and humans (9-13). However, because FOXP3 is an intracellular protein, surrogate surface markers must be used to purify Treg cells. Additional markers are frequently associated with human Treg function, including cytotoxic T lymphocyte associated antigen (CTLA-4) (14), L-selectin (CD62L) (15), aE-integrin (CD103) (16,17), and the glucocorticoid-induced tumor necrosis factor receptor (GITR) (18). However, none of these markers are selectively expressed by Treg cells, as they are also transiently upregulated in recently activated effector T (Teff) cells (18-21).The first commercially available monoclonal antibody (mAb) for studies of FOXP3 in human Treg cells (hFOXY) was quickly supplanted by the more specific mouse mAbs 206D, 236A, and 259D (22) and the rat anti-FOXP3 PCH101 clone (eBioscience) in flow-cytometry applications. PCH101 targets the N-terminal region of the 431 amino acid (aa) FOXP3 protein, while 206D, 236A, and 259D bind an epitope within the remaining N-terminus (aa 105-235), near the zinc finger region of