We investigate the rigid pavement influence on phase velocity dispersion of the Rayleigh wave by using numerical modeling. An overestimation of Rayleigh wave phase velocity is observed more than 10% deviation caused by high-velocity rigid pavement. Based on the generalized reflection and transmission (R/T) coefficient method, the linear eigenvalue problem is solved for vertically heterogeneous media with a rigid pavement structure. The secular function demonstrates the multi-valuedness which is different phase velocity at the same frequency for the single Rayleigh mode. To address mode misidentification problem, we adopt a new misfit function for multimodal dispersion inversion. A Markov chain Monte Carlo (MCMC) sampling algorithm is used to solve dispersion inversion. The synthetic test shows that Rayleigh wave dispersion inversion incorporating a pavement layer can improve estimation accuracy of shear wave velocity.