2023
DOI: 10.1101/2023.11.21.568020
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A simple correction to adjust for sampling biases in phylogeographic discrete trait analysis

David Jorgensen,
Margarita Pons-Salort,
Nicholas C Grassly

Abstract: Discrete trait analysis (DTA) methods are widely used to infer patterns of movement between discrete geographic locations from genetic sequence data as they are simple and fast to implement. With the increasing interest in phylogeography for pathogen genomic epidemiology, accounting for and understanding the limitations of the methods used is becoming increasingly important. Applying DTA to location makes several strong simplifying assumptions, including the assumption of equal sampling probability across loca… Show more

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References 63 publications
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