A salmon id phylogeny inferred from mitochondrial cytochrome b gene sequences

Mcveigh, H.; Davidson, William S.

doi:10.1111/j.1095-8649.1991.tb05090.x

Cited by 31 publications

(15 citation statements)

References 20 publications

(30 reference statements)

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“…The availability of mtDNA data has provided new perspectives on taxonomically debatable taxa and confusing questions of phylogeny (Groves and Shields, 1996). Among many mitochondrial genes, the mitochondrial cytochrome b gene has been widely used to study genetic variation (McVeigh and Davidson, 1991), phylogenetic relationships (Cavender and Coburn, 1992;Groves and Shields, 1996;Gilles et al, 1998;Perdices et al, 2004;Xiao et al, 2001), biogeographical patterns (Durand et al, 2002;Gilles et al, 2001;Xiao et al, 2001;Zardoya and Doadrio, 1999), and taxonomy (Burridge, 1999;Xiao et al, 2001) in many fishes and vertebrates. The rate of evolution of the cytochrome b gene (documented in Irwin et al, 1991) is appropriate for investigating events that have occurred within the last 20 million years, such as the evolution of the Cyprinidae.…”

Section: Introductionmentioning

confidence: 99%

Mitochondrial cytochrome b Sequence Variation and Phylogenetics of the Highly Specialized Schizothoracine Fishes (Teleostei: Cyprinidae) in the Qinghai-Tibet Plateau

Zhao

et al. 2006

Biochem Genet

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The complete 1140 bp mitochondrial cytochrome b sequences were obtained from 39 individuals representing five species of all four genera of highly specialized schizothoracine fishes distributed in the Qinghai-Tibet plateau. Sequence variation of the cytochrome b gene was surveyed among the 39 individuals as well as three primitive schizothoracines and one outgroup. Phylogenetic analysis suggested that the group assignment based on 1140 bp of the cytochrome b sequence is obviously different from previous assignments, and the highly specialized schizothoracine fishes (Schizopygopsis pylzovi, Gymnocypris przewalskii, G. eckloni, Chuanchia labiosa, and Platypharodon extremus) form a monophyletic group that is sister to the clade formed by the primitive schizothoracine fishes (Schizothorax prenanti, S. pseudaksaiensis, and S. argentatus). The haplotypes of Schizopygopsis pylzovi and G. przewalskii were paraphyletic based on cytochrome b data, which most likely reflected incomplete sorting of mitochondrial DNA lineages. The diploid chromosome numbers of Schizothoracinae were considered in phylogenetic analysis and provided a clear pattern of relationships. Molecular dating estimated for highly specialized schizothoracine fishes suggested that the highly specialized schizothoracine fishes diverged in the late Miocene Pliocene to Pleistocene (4.5 x 10(4)-4.05 x 10(6 ) years BP). The relationship between the cladogenesis of highly specialized schizothoracine fishes and geographical events of the Qinghai-Tibet plateau is discussed.

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Section: Introductionmentioning

confidence: 99%

Mitochondrial cytochrome b Sequence Variation and Phylogenetics of the Highly Specialized Schizothoracine Fishes (Teleostei: Cyprinidae) in the Qinghai-Tibet Plateau

Zhao

et al. 2006

Biochem Genet

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“…During the last 10 years, data on DNA came into wide use for reconstructing phylogenetic relationships in various groups, including the Salmonidae (Berg & Ferris, 1984;Gyllensten & Wilson, 1987;Grewe et al, 1990;Phillips & Pleyte, 1991;McVeigh & Davidson, 1991;Phillips et al, 1992;Kido et al, 1994;Shed'ko et al, 1996;Hamada et al, 1997;Oleynik, 1997). In this connection, the question of the use of allozyme data for phylogenetic reconstruction in the Salmoninae was withdrawn from the agenda.…”

Section: Introductionmentioning

confidence: 99%

Genetc divergence and phylogeny of the Salmoninae based on allozyme data

Osinov

Lebedev

2000

Journal of Fish Biology

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The data on 31-37 allozyme loci in 21 species of nine salmonid genera are used for phylogenetic analysis by seven distance methods and several variants of cladistic analysis. Monophyletic origin for all genera and three sub-families of the Salmonidae is corroborated. The closest phylogenetic relationships are characteristic of Parasalmo and Oncorhynchus (bootstrap support is 88-99%), Brachymystax and Hucho (68-97%), and the clade (Brachymystax+ Hucho)+Salmo (up to 85%). The patterns of phylogenetic relationships in the group Salmo-Parasalmo-Oncorhynchus are analogous to those in the group Parahucho-Hucho-Brachymystax. The position of Parahucho in phylogenetic trees of the Salmoninae is extremely unstable, although it is most likely associated with the clade ((Brachymystax+Hucho)+Salmo) or Salvelinus. When using the outgroup analysis, Salvelinus appears as the earliest branch of the Salmoninae tree, whereas if the molecular clock is assumed, the basal position is occupied by Oncorhynchus. However, the latter genus is probably characterized by a substantially increased rate of molecular evolution. 2000 The Fisheries Society of the British Isles

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“…In this study, we sequenced the entire NADH dehydrogenase subunit 3 (ND3) gene and about one third of the cytochrome b gene from 11 species of lampreys of the genus Lampetra and compared the data with published cytochrome b sequences from two additional Lampetra species (Tagliavini et al 1994). Cytochrome b sequence has been used to resolve phylogenetic relationships in a variety of fish taxa (e.g., Cantatore et al 1994), and the ND3 gene, which appears to evolve somewhat faster than cytochrome b (Thomas and Beckenbach 1989;McVeigh and Davidson 1991), may be useful in distinguishing among some of the more closely related paired and satellite species.…”

Section: Introductionmentioning

confidence: 99%

Phylogeny of the lamprey genusLampetrainferred from mitochondrial cytochromeband ND3 gene sequences

Docker¹,

Youson²,

Beamish³

et al. 1999

Can. J. Fish. Aquat. Sci.

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Mitochrondrial DNA analysis resolved many previously unanswered questions concerning the phylogeny of the lamprey genus Lampetra (comprising the subgenera Entosphenus, Lethenteron, and Lampetra). A total of 735 base pairs were sequenced from the cytochrome b and NADH dehydrogenase subunit 3 (ND3) genes in 11 lamprey species. With the exception of L . (E.) hubbsi from California, species of the Entosphenus subgenus formed a tight-knit clade that was very distinct from the other two subgenera. Lampetra hubbsi clustered with species of the Lampetra subgenus from the west coast of North America (L . ayresii and L . richardsoni) whereas species of the Lampetra subgenus from Atlantic drainages, namely the North American L . aepyptera and European L . fluviatilis, formed a third cluster. A fourth cluster included two species from the Lethenteron subgenus (L . japonica and L . appendix). Inclusion of published data from a third Lethenteron species, L . zanandreai, showed it to group with the L . (L .) fluviatilis lineage rather than with the other two Lethenteron species. Within each subgenus, members of paired and satellite species were closely related to one another (e.g., L . japonica and L . appendix) or were genetically indistinguishable (e.g., L . ayresii and L . richardsoni). Using rates of molecular evolution estimated in other fish taxa, these genetically indistinguishable species diverged less than 70 000 years ago.Résumé : L'analyse de l'ADN mitochrondial a permis de répondre à bon nombre de questions relativement à la phylogénie du genre de lamproie Lampetra (englobant les sous-genres Entosphenus, Lethenteron et Lampetra). On a déterminé la séquence d'un total de 735 paires de bases des gènes pour la cytochrome b et la sous-unité 3 de la NADH déshydrogénase (ND3) chez 11 espèces de lamproie. À l'exception de L . (E. ) hubbsi de la Californie, les espèces du sous-genre Enthosphenus formaient un clade cohérent très distinct de ceux des deux autres sous-genres. Lampetra hubbsi se rapprochait des espèces du sous-genre Lampetra de la côte ouest de l'Amérique du Nord

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A salmon id phylogeny inferred from mitochondrial cytochrome b gene sequences

Cited by 31 publications

References 20 publications

Mitochondrial cytochrome b Sequence Variation and Phylogenetics of the Highly Specialized Schizothoracine Fishes (Teleostei: Cyprinidae) in the Qinghai-Tibet Plateau

Mitochondrial cytochrome b Sequence Variation and Phylogenetics of the Highly Specialized Schizothoracine Fishes (Teleostei: Cyprinidae) in the Qinghai-Tibet Plateau

Genetc divergence and phylogeny of the Salmoninae based on allozyme data

Phylogeny of the lamprey genusLampetrainferred from mitochondrial cytochromeband ND3 gene sequences

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