IntroductionPolydiacetylenes (PDAs), which are classified into conjugated polymers [1,2], have attracted not only from their physical properties originating from one-dimensional -conjugated systems such as non-linear optics [3] or conductivity [4][5][6], but also from application to chemosensors [7]. PDAs are prepared by solid-state-polymerization of diacetylene monomers, where relative orientation of monomers is quite important for the polymerization [8] because molecular motions are restricted in their crystals. Many PDAs have a -(CH 2 ) n -side chain adjacent to the backbone in order to reduce lattice strain caused by the solid-state polymerization. However, gauche or pseudo gauche conformation of the side chain frequently prevents suitable molecular orientation for the polymerization. Examples of the polymerization in gauche conformer are limited to some diacetylenes [9]. Pyridines have a large variety of chemical modification such as oxidation, protonation or N-alkylation [10]. Pyridines can also work as ligands for metal complexes or hydrogen-bond acceptors in supramolecular complexes [11]. PDAs carrying pyridyl pendant groups promise to give novel functional materials. Few PDAs carrying a pyridyl unit, however, have been reported as a single component judged by their crystal packing structures. While Lauher et al. have proposed several crystal designs for arranging pyridine-containing diacetylene derivatives by utilizing template molecules [12,13].We report herein preparation and crystal structures of novel three pyridine-containing diacetylenes and discuss their molecular structures based on intermolecular interactions and DFT calculation.
Experimental
General ProcedureAll chemicals were purchased from Kanto Chemical Co. Ltd. or Tokyo Kasei Kogyo Co. Ltd. and were used without further purification. Compound 1 was prepared according to the literature [12]. 1 H and 13 C NMR spectra were recorded on a JEOL JNM−ECA−400 spectrometer in a deuterated solvent (chloroform−d) with tetramethylsilane as an internal standard. All 13 C NMR spectra were obtained with complete proton decoupling. IR spectra were recorded on a JASCO FT/IR−420 spectrometer by using a KBr pellet. Elemental analysis was performed on a J−SCEINCE LAB MICRO CORDER JM10.
Crystallographical analysisX-ray crystallographic data of 1-3 were obtained by a RIGAKU Saturn 724+ CCD device using multi-layered mirror monochromatic Mo K radiation at 93 K. The structures were solved by a direct method (SHELXD) [14] and were refined by full−matrix least-squares method (SHELXL97) [15]. The positions of non−H atoms were obtained from difference Fourier maps and were refined anisotropically. The C−bound H atoms were obtained by calculation and were refined as riding on their parent C atoms. U iso (H) values of the H atoms were set at 1.2U eq (parent C atoms). The N−bound and O−bound H atoms were obtained from difference Fourier maps and were refined isotropically.
DFT calculationsDFT calculations were performed on the GAMESS software [16,17] with B3LYP 6-31G (d...