Mating-type genes in fungi encode regulators of mating and sexual development. Heterothallic ascomycete species require different sets of mating-type genes to control nonself-recognition and mating of compatible partners of different mating types. Homothallic (self-fertile) species also carry mating-type genes in their genome that are essential for sexual development. To analyze the molecular basis of homothallism and the role of mating-type genes during fruiting-body development, we deleted each of the three genes, SmtA-1 (MAT1-1-1), SmtA-2 (MAT1-1-2), and SmtA-3 (MAT1-1-3), contained in the MAT1-1 part of the mating-type locus of the homothallic ascomycete species Sordaria macrospora. Phenotypic analysis of deletion mutants revealed that the PPF domain protein-encoding gene SmtA-2 is essential for sexual reproduction, whereas the ␣ domain protein-encoding genes SmtA-1 and SmtA-3 play no role in fruiting-body development. By means of crossspecies microarray analysis using Neurospora crassa oligonucleotide microarrays hybridized with S. macrospora targets and quantitative real-time PCR, we identified genes expressed under the control of SmtA-1 and SmtA-2. Both genes are involved in the regulation of gene expression, including that of pheromone genes.Sex, one mechanism of the genetic diversity of species, is ubiquitous across kingdoms. To avoid self-crossing, genetic barriers have evolved that prevent selfing, and these often culminate in sexual dimorphism. In filamentous ascomycetes, sexual dimorphism is almost nonexistent, and in many cases individuals are hermaphrodites. Here, sex is determined genetically by a sex-specific region in the genome known as the mating-type locus (MAT) (10).Fungi exhibit two different sexual life styles, homothallism (self-fertility) and heterothallism (self-sterility) (46). This phenomenon was first discovered by Blakeslee in the group of zygomycetes, a lineage that diverged early within the fungal kingdom (5). Only recently was the sequence of the matingtype locus of Phycomyces blakesleeanus (Zygomycota) discovered (36). It was shown that each mating-type locus contains one single gene coding for a protein with a high-mobility group (HMG) (31) (Fig. 1). Both genes show low-level amino acid similarity and confer the ability to mate as either a MAT (Ϫ) or a MAT (ϩ) strain.Similarly, heterothallic ascomycetes contain a single matingtype locus with two alternate alleles. The DNA sequences at the mating-type locus in individuals of different mating types show almost no homology. To emphasize the dissimilarity between and the different origins of the genes of different matingtype loci, they have been termed idiomorphs instead of alleles (49).In ascomycetes, mating is best characterized at the molecular level in the budding yeast Saccharomyces cerevisiae. The MAT idiomorphs, MATa and MAT␣, encode regulatory proteins which, in combination with other transcription factors, are responsible for a distinct pattern of expression in the three yeast cell types: haploid MATa and MAT␣ cells and d...