Abstract:Pulsed field gradient NMR (PFG-NMR) diffusion experiments were used to investigate the binding of leucine and methionine enkephalin peptides to anionic sodium dodecyl sulfate (SDS) micelles. The study was undertaken to investigate the mechanism of interaction between enkephalin peptides and SDS micelles and to determine if NMR-derived association constants, K(eq), can predict the elution order in electrokinetic chromatography (EKC). In EKC, peptides are separated on the basis of their interactions with micelle… Show more
“…Using a similar approach, the equilibrium constants for the association of different leucine-and methionine-enkephalin peptides (34) and of the tripeptide GHG (33) with SDS micelles had been determined. Calculating the reciprocal and dividing it by the aggregation number for SDS micelles (ϭ 51 (49)) gives the K d values for the association with SDS micelles, which range for the different leucine-enkephalin peptides from 0.385 to 0.008 mM and for the different methionine-enkephalin peptides from 0.754 to 0.029 mM.…”
Section: Discussionmentioning
confidence: 99%
“…K d Determination-The dissociation constant for oxidized and reduced y1fatc bound to DPC micelles was determined using an approach similar to the one described in previous studies (33,34). If the protein-micelle complex is on fast exchange on the diffusion time scale, the measured diffusion coefficient D is a weighted average given by: …”
Section: Methodsmentioning
confidence: 99%
“…To calculate the K d for the protein-micelle complex, f b,p was derived from the measured diffusion constants as described above (33,34). The concentration of free micelles was estimated in the following way.…”
The target of rapamycin (TOR) is a conserved eukaryotic Ser/ Thr kinase that regulates cellular growth in response to the nutrient and energy state. TOR signaling plays an important role in the development of diseases such as cancer, obesity, and diabetes and in different redox-sensitive processes (hypoxia, apoptosis, and aging). Because TOR has been detected at different cellular membranes and in the nucleus, its localization may influence the specific signaling readout.
“…Using a similar approach, the equilibrium constants for the association of different leucine-and methionine-enkephalin peptides (34) and of the tripeptide GHG (33) with SDS micelles had been determined. Calculating the reciprocal and dividing it by the aggregation number for SDS micelles (ϭ 51 (49)) gives the K d values for the association with SDS micelles, which range for the different leucine-enkephalin peptides from 0.385 to 0.008 mM and for the different methionine-enkephalin peptides from 0.754 to 0.029 mM.…”
Section: Discussionmentioning
confidence: 99%
“…K d Determination-The dissociation constant for oxidized and reduced y1fatc bound to DPC micelles was determined using an approach similar to the one described in previous studies (33,34). If the protein-micelle complex is on fast exchange on the diffusion time scale, the measured diffusion coefficient D is a weighted average given by: …”
Section: Methodsmentioning
confidence: 99%
“…To calculate the K d for the protein-micelle complex, f b,p was derived from the measured diffusion constants as described above (33,34). The concentration of free micelles was estimated in the following way.…”
The target of rapamycin (TOR) is a conserved eukaryotic Ser/ Thr kinase that regulates cellular growth in response to the nutrient and energy state. TOR signaling plays an important role in the development of diseases such as cancer, obesity, and diabetes and in different redox-sensitive processes (hypoxia, apoptosis, and aging). Because TOR has been detected at different cellular membranes and in the nucleus, its localization may influence the specific signaling readout.
“…Viscosity measurements were made on select solutions to confirm that the changes observed in the micelle diffusion coefficients resulted from changes in their hydrodynamic radii and not from increasing solution viscosity. NMR diffusion measurements were also used to investigate the effect of solution pH on the binding of cationic amino acids to the negatively charged und-Leu micelle surface [29][30][31][32][33][34]. The counterions investigated in this study were sodium (Na ? )…”
Micelle formation by the amino acid‐based surfactant undecylenyl l‐leucine was investigated as a function of solution pH with NMR, dynamic light scattering, and fluorescence spectroscopy. NMR and dynamic light scattering showed that 50 mM undecylenyl l‐leucine and 50 mM NaHCO3 solutions contained micelles approximately 20 Å in diameter and that micelle radius and the mole fraction of surfactant molecules associated with micelles changed very little with solution pH. The binding of the amino acids arginine and lysine to the anionic micelles was also investigated from pH 7.0 to 11.5. Below pH 9.0, the mole fraction of arginine cations bound to the micelles was approximately 0.4. Above pH 9.0, the arginine counterions became zwitterionic, and the mole fraction of bound arginine molecules decreased steadily to less than 0.1 at pH 11. When arginine dissociated from the micelles, their radii decreased from 14 to 10 Å. Similar behavior was observed with lysine; however, when lysine dissociated from the micelle surface, little change in micelle radius was observed. Two‐dimensional NMR experiments suggested that below pH 9.0, l‐arginine bound perpendicular to the micelle surface primarily though its side chain amine while l‐lysine bound parallel to the surface through both of its amine functional groups. Finally, the rate at which the amide protons on the surfactant headgoup exchanged with solvent was investigated with NMR spectroscopy. The exchange reaction was faster in solutions containing only surfactant monomers and slower when the surfactants were in micellar form and the headgoup amide protons were less exposed to solvent.
“…A number of reports have demonstrated the use of diffusion NMR in studying how surfactants, such as SDS, can solubilise peptides, hydrophobic drugs and as controlled release scaffolds [50][51][52] . This concept has been thoroughly reviewed by Silber et al 53 and provides a good theoretical underpinning of the thermodynamics of the process and of the selection mechanism.…”
Diffusion NMR is potentially a routine tool in the analysis of mixtures, from industrial and synthetic outputs to natural products. However, the technique struggles to resolve species of similar size. Matrix-assisted DOSY offers a flexible approach to resolving such ambiguities on the basis of the chemical structures involved and on their interactions with a larger co-solute or matrix. The use of chromatographic supports, surfactants and polymers, in particular, is illustrated. The resolution of a wide range of different analyte mixtures, on the basis of differences in chemical structure and in stereochemistry, is demonstrated.
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