Reportedly, some species of sea cucumbers have anti-inflammatory and antiproliferative effects on cancer cells. Holothuria polii inhibited the proliferation of MDA-MB-23I cells and reduced the expression of proinflammatory cytokines in animal models. 15 The H. scabra extract decreases the overexpression of human epidermal growth factor receptor 2 (HER2) and matrix metalloproteinase-9 (MMP9) in a breast cancer mice model 16 and has strong activity against nitric oxide (NO) radical. 17 Isostichopus badionotus extract has an anti-inflammatory effect by modulating the expression of NFκB, inducible NO synthase (iNOS), and cyclooxygenase. 18 However, no research focusing on the activity of the ingredients in sea cucumber as anticancer and inflammatory targets for NFκB exists. This study aims to identify the sea cucumber compounds that have the potency to inhibit NFκB using an in silico approach. The inhibition of the NFκB proteins should be beneficial for cancer treatment. 19
Material and Methods
Preparation of Protein and LigandsThe 3D structure of the NFκB protein was obtained from RCSB (https://www.rcsb.org/) with the PDB ID for NFκB (1SVC). 20 The protein was prepared using the BIOVIA Discovery Studio 2019 software (Dassault Systèmes BIOVIA, San Diego, California, USA). The peptides of sea cucumbers (Cucumaria frondosa) were VMLGMLWTLLLR, VELWR, WNWKL, YDWRF, WPPNYQW, KMLWK, EMEWR, EEELAALVLDNGSGMCK, RMCCCSPLK, MMSLHL, TEFHLL, and WNWKV. 21 Peptide structures were established using PEP-FOLD3 (webserver modeled://263bioserv.rpbs.univ-paris-diderot.fr/services/PEP-FOLD3/). The other sea cucumber compounds studied were Holotoxin A (CID: 3085093), Stichoposide C (CID: 76871760), and Scabraside D (CID: 159134). 22 Those compound structures and the 3D structure of the caffeic acid phenethyl ester (CAPE)