Purified heat shock transcription factor 1 (HSF1) binds to both the regulatory and catalytic components of the DNA-dependent protein kinase (DNA-PK). This observation suggests that DNA-PK may have a physiological role in the heat shock response. To investigate this possibility, we performed a comparison of cell lines that were deficient in either the Ku protein or the DNA-PK catalytic subunit versus the same cell lines that had been rescued by the introduction of a functional gene. DNA-PK-negative cell lines were up to 10-fold more sensitive to heat-induced apoptosis than matched DNA-PK-positive cell lines. There may be a regulatory interaction between DNA-PK and HSF1 in vivo, because constitutive overexpression of HSF1 sensitized the DNA-PK-positive cells to heat but had no effect in DNA-PK-negative cells. The initial burst of hsp70 mRNA expression was similar in DNA-PK-negative and -positive cell lines, but the DNA-PK-negative cells showed an attenuated rate of mRNA synthesis at later times and, in some cases, lower heat shock protein expression. These findings provide evidence for an antiapoptotic function of DNA-PK that is experimentally separable from its mechanical role in DNA double strand break repair.The DNA-dependent protein kinase (DNA-PK) 1 is composed of a 470-kDa catalytic subunit (DNA-PKcs) and a 70/80-kDa heterodimeric regulatory component known as Ku protein. Ku protein binds avidly to DNA ends (1) and recruits DNA-PKcs to form an active complex (2-4). Mutations in DNA-PKcs or Ku protein have been described in mammals, flies, and yeast, and in each case, the mutant organism is deficient in double strand break repair, sensitive to ionizing radiation, or both (reviewed in Refs. 5 and 6). Binding of DNA-PK components to DNA is believed to be the first step in a repair pathway that involves a number of other gene products (reviewed in Ref. 7).It is not clear if the ability of DNA-PK to protect against the cytotoxic effect of ionizing radiation is attributable solely to the mechanical role of the enzyme in DNA repair or whether DNA-PK also participates in antiapoptotic signaling. There have been several reports that DNA-PK physically interacts with signaling molecules, including poly(A)DP-ribose polymerase, IB, Vav, c-Abl, and certain transcription factors (8 -12), but the physiological significance of these interactions has not yet been fully explored.In the present study, we investigate the in vivo role of a previously described interaction between DNA-PK and the heat shock transcription factor, HSF1 (12, 13). These prior studies have shown that purified HSF1 binds to both the Ku protein and DNA-PKcs (13). The binding requires a phylogenetically conserved region of HSF1 that includes amino acids 203-280 and results in a stimulation of DNA-PK phosphorylation activity of up to 20-fold in an in vitro reaction (13). These observations suggest that DNA-PK may be involved in regulating some aspect of the heat shock response in vivo.Other evidence also suggests an involvement of DNA-PK in the response to ...