A phylogeny of the family Fanniidae Schnabl (Insecta:Diptera:Calyptratae) based on adult morphological characters, with special reference to the Austral species of the genus Fannia
Abstract:The present study proposed a phylogenetic hypothesis of the family Fanniidae based on a cladistic analysis using characters from adult external morphology and female and male terminalia. The main purpose of this study was to clarify the phylogenetic position of newly described or poorly known species, mostly from southern South America, the Neotropics, Africa, Australia and New Zealand. In total, 151 characters from adult male and female external morphology and terminalia were scored for 78 species of Fanniida… Show more
“…In fact, its developer has stated (Felsenstein 2002) that because all the correlations of continuous data cannot be known, a probabilistic model of their evolution cannot be built, and they are useful in retrospect only (mapped on to trees built from other data). TNT, the parsimony program, has received similar attention (Abdala 2007; Dominguez and Roig‐Junent 2008), also being rejected by some for its underlying assumptions about the evolution of characters (Legendre et al. 2008).…”
Section: Discussionmentioning
confidence: 99%
“…2007; Lycett 2007; Asher et al. 2008; Dominguez and Roig‐Junent 2008; Hardy et al. 2008; Moon et al.…”
Section: Introductionmentioning
confidence: 99%
“…In addition, recent analyses of rodent skulls in search of phylogenetic information (Gunduz et al 2007;Macholan 2008) are an interesting return to morphology in a group that has helped mark the milestones in systematics, from the phenetic analysis of morphological data (Lidicker 1973;Levenson et al 1985) and cladistic analysis of electrophoretic (Levenson et al 1985) and discrete morphological data (Novacek 1992), to some of the more illuminating discussions on the analysis of DNA sequence data (Allard et al 1991;Graur et al 1991;Luckett and Hartenberger 1993;Sullivan and Swofford 1997;DeBry 2003). Other researchers have looked to measurements and shape descriptors for new characters Chu 1998;Budd and Klaus 2001;Bookstein 2002;Buijsen et al 2003;Datwyler and Wolfe 2004;Pelser et al 2004;Dessein et al 2005;Abdala 2007;Lens et al 2007;Lycett 2007;Asher et al 2008;Dominguez and Roig-Junent 2008;Hardy et al 2008;Moon et al 2008) and we join their efforts here.…”
A phylogenetic estimation of the temperate Gondwanan mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) was conducted using 143 morphological variables (59 raw and 84 scaled measurements) from 37 ingroup and 15 outgroup terminals. We used custom algorithms to do pairwise comparisons between characters and identify sets of dependent characters, which were collapsed using principal components analysis. We analysed the resulting data without discretization under the parsimony criterion. Monophyly or paraphyly of most groups suspected from previous molecular and morphological phylogenetic studies were recovered. Trees were optimized for monophyly of 20 different focus clades by varying character phylogenetic independence. This yielded a final tree with monophyly of 15 out of 20 focus clades, including the South African pettalids, which contains the troglomorphic species Speleosiro argasiformis Lawrence, 1931. Two of the remaining five clades were found paraphyletic, with the genera Aoraki, Rakaia, and Siro always being found polyphyeletic.
“…In fact, its developer has stated (Felsenstein 2002) that because all the correlations of continuous data cannot be known, a probabilistic model of their evolution cannot be built, and they are useful in retrospect only (mapped on to trees built from other data). TNT, the parsimony program, has received similar attention (Abdala 2007; Dominguez and Roig‐Junent 2008), also being rejected by some for its underlying assumptions about the evolution of characters (Legendre et al. 2008).…”
Section: Discussionmentioning
confidence: 99%
“…2007; Lycett 2007; Asher et al. 2008; Dominguez and Roig‐Junent 2008; Hardy et al. 2008; Moon et al.…”
Section: Introductionmentioning
confidence: 99%
“…In addition, recent analyses of rodent skulls in search of phylogenetic information (Gunduz et al 2007;Macholan 2008) are an interesting return to morphology in a group that has helped mark the milestones in systematics, from the phenetic analysis of morphological data (Lidicker 1973;Levenson et al 1985) and cladistic analysis of electrophoretic (Levenson et al 1985) and discrete morphological data (Novacek 1992), to some of the more illuminating discussions on the analysis of DNA sequence data (Allard et al 1991;Graur et al 1991;Luckett and Hartenberger 1993;Sullivan and Swofford 1997;DeBry 2003). Other researchers have looked to measurements and shape descriptors for new characters Chu 1998;Budd and Klaus 2001;Bookstein 2002;Buijsen et al 2003;Datwyler and Wolfe 2004;Pelser et al 2004;Dessein et al 2005;Abdala 2007;Lens et al 2007;Lycett 2007;Asher et al 2008;Dominguez and Roig-Junent 2008;Hardy et al 2008;Moon et al 2008) and we join their efforts here.…”
A phylogenetic estimation of the temperate Gondwanan mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) was conducted using 143 morphological variables (59 raw and 84 scaled measurements) from 37 ingroup and 15 outgroup terminals. We used custom algorithms to do pairwise comparisons between characters and identify sets of dependent characters, which were collapsed using principal components analysis. We analysed the resulting data without discretization under the parsimony criterion. Monophyly or paraphyly of most groups suspected from previous molecular and morphological phylogenetic studies were recovered. Trees were optimized for monophyly of 20 different focus clades by varying character phylogenetic independence. This yielded a final tree with monophyly of 15 out of 20 focus clades, including the South African pettalids, which contains the troglomorphic species Speleosiro argasiformis Lawrence, 1931. Two of the remaining five clades were found paraphyletic, with the genera Aoraki, Rakaia, and Siro always being found polyphyeletic.
“…With regard to intra‐familial relationships of the Fanniidae, the basal split is probably between the monotypic genus Australofannia Pont and the remaining members of this family (Pont, 1977; Domínguez & Roig‐Juñent, 2008). Within the Muscidae, stability has yet to be achieved with regard to both the composition and the phylogenetic relationships of the eight subfamilies usually recognized (Achanthipterinae, Atherigoninae, Azeliinae, Cyrtoneurininae, Coenosiinae, Muscinae, Mydaeinae, Phaoniinae) (Couri & Pont, 2000; Couri & Carvalho, 2003; Savage et al , 2004; Nihei & Carvalho, 2007; Schuehli et al , 2007; Kutty et al , 2008).…”
Abstract. The dipteran clade Calyptratae is comprised of approximately 18 000 described species (12% of the known dipteran diversity) and includes well-known taxa such as houseflies, tsetse flies, blowflies and botflies, which have a close association with humans. However, the phylogenetic relationships within this insect radiation are very poorly understood and controversial. Here we propose a higher-level phylogenetic hypothesis for the Calyptratae based on an extensive DNA sequence dataset for 11 noncalyptrate outgroups and 247 calyptrate species representing all commonly accepted families in the Oestroidea and Hippoboscoidea, as well as those of the muscoid grade. DNA sequences for genes in the mitochondrial (12S, 16S, cytochrome c oxidase subunit I and cytochrome b) and nuclear genome [18S, 28S, the carbamoyl phosphate synthetase region of CAD (rudimentary), Elongation factor one alpha] were used to reconstruct the relationships. We discuss problems relating to the alignment and analysis of large datasets and emphasize the advantages of utilizing a guide treebased approach for the alignment of the DNA sequences and using the leaf stability index to identify 'wildcard' taxa whose excessive instability obscures the phylogenetic signal. Our analyses support the monophyly of the Calyptratae and demonstrate that the superfamily Oestroidea is nested within the muscoid grade. We confirm that the monotypic family Mystacinobiidae is an oestroid and further revise the composition of the Oestroidea by demonstrating that the previously unplaced and still undescribed 'McAlpine's fly' is nested within this superfamily as a probable sister group to Mystacinobiidae. Within the Oestroidea we confirm with molecular data that the Calliphoridae are a paraphyletic grade of lineages. The families Sarcophagidae and Rhiniidae are monophyletic, but support for the monophyly of Tachinidae and Rhinophoridae depends on analytical technique (e.g. parsimony or maximum likelihood). The superfamilies Hippoboscoidea and Oestroidea are consistently found to be monophyletic, and the paraphyly of the muscoid grade is confirmed. In the overall relationships for the calyptrates, the Hippoboscoidea are sister group to the remaining Calyptratae, and the Fanniidae are sister group to the nonhippoboscoid calyptrates, whose relationships can be summarized as (Muscidae (Oestroidea (Scathophagidae, Anthomyiidae))).
“…In previous studies, morphometric data has been used in order to provide new sources of characters in systematics (Fink & Zelditch, 1995;Bookstein, 2002;Pelser et al, 2004;Dessein et al, 2005;Abdala, 2007;Domínguez & Roig-Juñent, 2008;Moon et al, 2008;Aguilar-Medrano et al, 2011). Recently, the use of morphometrics in systematic contexts has undergone a clear revival (Humphries, 2002) through the development of new methodologies that allow a more efficient and elegant use of shape information, such as the direct use of x, >; (and 3D) coordinates (Catalano et al, 2010).…”
Chromis is a circumglobal tropical and temperate genus with over 84 species of damselfishes. Studies based in osteological and molecular data have cited the relationship between Azurina and Chromis in the eastern Pacific. The main objectives of the study are: (1) to characterize size and shape in all Chromis and Azurina species of the eastern Pacific, (2) explore the phylogenetic signal of external morphology, and (3) present a hypothesis of the diversification process of this group. According to the results, there is no significant relationship between size and shape. The variation in body shape among all species is related to the height of the trunk, position of the snout and eye, and length of the caudal peduncle. The main morphologic variation between Azurina and Chromis is the degree of elongation of the body. Both Azurina species are closely related to C. punctipinnis and C. atrilobata. The morphological pattern of Azurina integrated it into Chromis. The phylogenetic pattern found by geometric morphometric analyses presented a high similarity with previous results based on molecular data. Phylogeny recovered two main clades, slender-bodied and deep-bodied species. This pattern of morphometric variation is closely related to exploitation of two different reef environments.
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