TREK-1 is a member of the two-pore domain potassium channel family that is known as a leak channel and plays a key role in many physiological and pathological processes. The conformational transition of the selectivity filter is considered as an effective strategy for potassium channels to control the course of potassium efflux. It is well known that TREK-1 is regulated by a large volume of extracellular and intracellular signals. However, until now, little was known about the selectivity filter gating mechanism of the channel. In this research, it was found that Ba 2؉ blocked the TREK-1 channel in a concentration-and timedependent manner. A mutagenesis analysis showed that overlapped binding of Ba 2؉ at the assumed K ؉ binding site 4 (S4) within the selectivity filter was responsible for the inhibitory effects on TREK-1. Then, Ba 2؉ was used as a probe to explore the conformational transition in the selectivity filter of the channel. It was confirmed that collapsed conformations were induced by extracellular K ؉ -free and acidification at the selectivity filters, leading to nonconductive to permeable ions. Further detailed characterization demonstrated that the two conformations presented different properties. Additionally, the N-terminal truncated isoform (⌬N41), a product derived from alternative translation initiation, was identified as a constitutively nonconductive variant. Together, these results illustrate the important role of selectivity filter gating in the regulation of TREK-1 by the extracellular K ؉ and proton.Potassium channels are ubiquitous pore-forming transmembrane proteins that transport K ϩ ions selectively and rapidly across the biological membranes. The efflux of K ϩ ions is controlled not only by the electrochemical gradient, but also by the gating mechanism. Along the ion conduction pathway of potassium channels, three structures are arranged from intercellular to extracellular: the lower activation gate, the selectivity filter (SF) 2 , and the upper inactivation gate (also termed the C-type inactivation gate). Correspondingly, there are mainly two kinds of mechanisms controlling K ϩ ion passage. Manipulation of the lower activation gate controls the transition between the open and close state of the channel. The upper inactivation gate, which is characterized by slow kinetics, controls the transition between conduction and nonconduction of the pore. The selectivity filter of the K ϩ channels, formed by the highly conserved sequence TV(I)GY(F)G, plays a pivotal role in both mechanisms. Accumulating evidence shows that the selectivity filter itself has the ability to act as the inactivation gate (1-4). High resolution crystallographic analysis has revealed detailed structural changes in the selectivity filter associated with the activation gating and inactivation gating (5, 6). The carbonyl oxygens together with the side chain hydroxyl oxygen of the threonine define four equally spaced ion-binding sites that are commonly termed S1-S4, from the extracellular to the intracellular region (7)...