The strychnine-sensitive glycine receptor (GlyR) is a ligandgated chloride channel and a member of the superfamily of cysteine loop (Cys-loop) neurotransmitter receptors, which also comprises the nicotinic acetylcholine receptor (nAChR). Within the extracellular domain (ECD), the eponymous Cysloop harbors two conserved cysteines, assumed to be linked by a superfamily-specific disulfide bond. The GlyR ECD carries three additional cysteine residues, two are predicted to form a second, GlyR-specific bond. The configuration of none of the cysteines of GlyR, however, had been determined directly. Based on a crystal structure of the nAChR␣1 ECD, we generated a model of the human GlyR␣1 where close proximity of the respective cysteines was consistent with the formation of both the Cys-loop and the GlyR-specific disulfide bonds. To identify native disulfide bonds, the GlyR␣1 ECD was heterologously expressed and refolded under oxidative conditions. By matrix-assisted laser desorption ionization time-of-flight mass spectrometry, we detected tryptic fragments of the ECD indicative of disulfide bond formation for both pairs of cysteines, as proposed by modeling. The identity of tryptic fragments was confirmed using chemical modification of cysteine and lysine residues. As evident from circular dichroism spectroscopy, mutagenesis of single cysteines did not impair refolding of the ECD in vitro, whereas it led to partial or complete intracellular retention and consequently to a loss of function of full-length GlyR subunits in human embryonic kidney 293 cells. Our results indicate that the GlyR ECD forms both a Cys-loop and a GlyR-specific disulfide bond. In addition, cysteine residues appear to be important for protein maturation in vivo.The glycine receptor (GlyR) 2 is a ligand-gated ion channel that mediates fast neuronal inhibition predominantly in the spinal cord and brain stem (1). In the mammalian central nervous system, five gene variants of homologous GlyR subunits have been identified (2), four belong to the ␣-type (␣1-␣4) and one to the -type. The GlyR complex presents as a rosette-like assembly of five subunit polypeptides surrounding a central anion pore. During development of the spinal cord, embryonic ␣2-homopentamers are largely replaced by adult heteromeric isoforms (3), composed of 3 -and 2 ␣-subunits (4).The GlyR belongs to the superfamily of cysteine loop (Cysloop) receptors, which also comprises GABA A/C (␥-aminobutyric acid) receptors, nicotinic acetylcholine receptors (nAChR), and 5-hydroxytryptamine type 3 receptors. Structural predictions for Cys-loop receptors rely on sequence-based predictions and mutational studies. Crystal structures of the Lymnaea stagnalis acetylcholine-binding protein (AChBP), the Torpedo marmorata nAChR, the extracellular domain (ECD) of the murine nAChR␣1, and prokaryotic proton-gated channels indicate a common, conserved protein fold (5-8). Accordingly, each subunit of a Cys-loop receptor comprises a large amino-terminal ECD adopting a twisted -sandwich structure that pr...