To eliminate the jump points of multipole angle values after subdivision at low temperature, the magnetic field and temperature field characteristics of a multipole magnetic encoder are analyzed in this study, and the effect of changes in magnetic field strength and temperature field on the precision of angle values is studied. To eliminate the jump point of multipole angle values caused by changes in the temperature field, the suppression method based on single-pole angle value fitting is proposed. The error between the single-pole and multipole angle values is tabulated by the oversampling linear interpolation method, and the precision of fitting single-pole to multipole angle values is effectively improved. The error of the angle value caused by changes in the temperature field is studied and analyzed, and the relationship between the jump angle values and the pole number of the multipole magnetic encoder is obtained. Furthermore, the jump point is compensated for by the jump range of the multipole angle values. Finally, the angle accuracy of the multipole magnetic encoder in a cryogenic chamber is experimentally verified. The experimental results show that the low-temperature jump point compensation method proposed for the multipole magnetic encoder in this paper can effectively suppress the jump of the angle values.