A new winter wheat genetic resource harbours untapped diversity from synthetic hexaploid wheat.

Abstract

The allelic richness harboured in progenitors of hexaploid bread wheat (Triticum aestivum L.) is a useful resource for addressing the genetic diversity bottleneck in modern cultivars. Synthetic Hexaploid Wheat (SHW) is created through resynthesis of the hybridisation events between the tetraploid (Triticum turgidum subsp. durum) and diploid (Aegilops tauschii) bread wheat progenitors. We developed a large and diverse winter wheat Nested Association Mapping (NAM) population (termed the NIAB_WW_SHW_NAM) consisting of 3241 genotypes derived from 54 nested back-cross 1 (BC1) populations, each formed via back-crossing a different primary SHW into the UK winter wheat cultivar ‘Robigus’. The primary SHW accessions were created using 15 T. durum donors and 47 Ae. tauschii accessions that spanned the lineages and geographical range of the species. Primary SHW parents were typically earlier flowering, taller and showed better resistance to yellow rust infection (Yr) than ‘Robigus’. The NIAB_WW_SHW_NAM population was genotyped using a single nucleotide polymorphism (SNP) array and 27 Quantitative Trait Loci (QTLs) were detected for flowering time, plant height and Yr resistance. Across multiple field trials, a QTL for Yr resistance was found on chromosome 4D that corresponded to the Yr28 resistance gene previously reported in other SHW accessions. These findings highlight the value of the NIAB_WW_SHW_NAM population for genetic mapping and provide the first evidence of Yr28 working in current UK environments and genetic backgrounds. These examples, coupled with the evidence of commercial wheat breeders selecting promising genotypes, highlights the potential value of the NIAB_WW_SHW_NAM to variety improvement.

Development of a Next Generation SNP Genotyping Array for Wheat

“…The bread wheat genome already contains significant genetic variation and much work is being done to enhance the germplasm with novel alleles from wide crosses. The previous 35k Breeders array had previously been used with wheat wild relative material in a pre-breeding context (Kumar et al, 2020; Wright et al, 2023) and for elite durum wheat cultivars (Kabbaj et al, 2017; Ganugi et al, 2021; Shewry et al, 2023). The genotype calls generated on the TaNG v1.1 array across a diverse set of wheat relative material here (Supplementary File S4) illustrate that secondary and tertiary genepool material may also be genotyped alongside T. aestivum accessions.…”

Development of a next generation SNP genotyping array for wheat

“…The bread wheat genome already contains significant genetic variation, and much work is being done to enhance the germplasm with novel alleles from wide crosses. The previous 35k Breeders array had previously been used with wheat wild relative material in a pre-breeding context (Horsnell et al, 2023;Kumar et al, 2020;Wright et al, 2023) and for elite durum wheat cultivars (Ganugi et al, 2021;Kabbaj et al, 2017;Shewry et al, 2023). The genotype calls generated on the TaNG v1.1 array across a diverse set of wheat relative material here (Data S4) illustrate that secondary and tertiary gene pool material may also be genotyped alongside T. aestivum accessions.…”