A new simulation framework to evaluate the suitability of eDNA for marine and aquatic Environmental Impact Assessments

Abstract

This study evaluates how eDNA information could be used within Environmental Impact Assessment (EIA). We developed an original model to simulate the conditions for which an eDNA signal detects, or does not detect, an impact on a targeted (receptor) species in a given project area. The simulation has four consecutive steps. First, a deterministic model simulated the dynamics of the receptor population and their eDNA fragment concentrations in the environment. Second, random distributions of receptor organisms and eDNA fragment quantities at steady-state were simulated within the project area. Then Simple Random Samplings were performed for both the receptor and eDNA. Third, post-sampling processes (eDNA extraction, amplification, analysis) were simulated to estimate the detection probability of the species from sample plan characteristics (size of sampling unit, number of samples collected). Fourth, we simulated an impact by modifying the growth, mortality and mobility (null, passive and active) parameters of the receptor species, then determined if an impact was detected. Detection probability curves were estimated for a range of sample volumes fitted with a Weibull cumulative distribution function. An F-like statistic compared detection curves before and after impact. Twelve scenarios were simulated. A statistically significant impact was detected with eDNA when receptor species growth rate was halved, but only in cases of null or passive mobility. When the receptor experienced both reduced growth and increased mortality rates, an impact was detected in all three mobility cases (null, passive and active). Our results suggest that an impact could be detected using eDNA if both the population dynamics of the receptor and the dynamics of DNA shed into the environment are known. These results indicate that caution should be exercised with eDNA data for EIA, but the proposed framework provides a valuable starting point to improve interpretation of indirect observation methods such as eDNA.

Beyond species detection—leveraging environmental DNA and environmental RNA to push beyond presence/absence applications

“…Changes in species composition and their distributions are the measurable indices for Ecological Impact Assessments (EIA), and eDNA analysis would be an advantageous method for EIA. Coston‐Guarini et al (2023) explore the suitability of eDNA analysis for EIA by simulating the detection probability of eDNA of the target population with some factors causing variabilities such as population growth and the mobility of the population. Their results highlighted the need for testing sampling strategies and basic environmental factors to ensure reliable forecasting of eDNA reactivity when applying eDNA analysis for EIA.…”