A new kinetic model for biochemical oscillations: Graph-theoretical analysis

Goldstein, B.N.; Aksirov, A. M.; Zakrjevskaya, D.T.

doi:10.1016/j.bpc.2009.09.008

Cited by 6 publications

(1 citation statement)

References 29 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…This approach suggests a comparison with decoding metabolic pathways (especially in evolutionary biochemistry), when by the end of the 20th century, instead of a harmonious and deterministic set of "averaged normal metabolism" lines, a complicated network of processes emerged that was flexibly rearranged from one biochemical pathway to another, as in physiological processes (from permanent adaptation to impulse and trigger rearrangements as a result of cellular signaling), as well as with external physical and chemical signals in a form mediated by the physiological mechanisms. Accordingly, there are no fundamental obstacles to comparing transitions between linear, graph and network (including three-dimensional) kinetic models of biochemical oscillations [515,516] and similar transitions between linear, graph, network (including three-dimensional) kinetic models of other (non-biochemical and, as a rule, preceding and more general in relation to biophysical models [517,518]) kinetic oscillations.…”

Section: Similarity Between the Equivalent Circuits Of Semiconductor ...mentioning

confidence: 99%

Photoinduced Self-Organization in “Semiconductor World”: Part I. from Protophotosynthesis to Protomembranes

Gradov,

Gradova

2023

Preprint

View full text Add to dashboard Cite

This work is the first part of a series of papers on a comprehensive analysis of the processes of prebiotic self-organization and protophotosynthesis on the surface of semiconductor minerals and in systems of natural dispersed semiconductors. Comprehensive analysis within the framework of the "semiconductor world" concept allows integrating a variety of models on a single physical basis - from ZnS world and FeS world (based on inorganic semiconductors) to the PAH world and aromatic world (including organic semiconductors). Thus, we do not put forward a new alternative hypothesis of chemical evolution - a new "chemical world", but only integrate the evolutionary and geochemical criteria of different "chemical worlds" into a single "physical world", which gives one the opportunity to reconstruct and predict the directions of chemical evolution according to the uniform principles of physical chemistry. In the first part of this series we consider photoinduced self-organization and "photo-controlled" evolution of the early protobiological systems performing solar energy conversion on the surface of dispersed semiconductor minerals capable of (photo)catalyzing and photosensitizing prebiological processes. The latter include a transition from the elementary cycles of photocatalytic reactions on the surface of semiconductors to protophotometabolic cycles and protophotosynthesis, from photophysical processes on the surface of mineral semiconductors to photoinduced membrane potentials, from photocontrolled sorption on the surface of such minerals to the formation of photosensitive protomembranes and selection of photosynthetic structures. The evolutionary approach to the analysis of protobiological mechanisms and protobioenergetics within the framework of the "semiconductor world" concept provides a new approach to the study of the last common point of divergence of protobiological systems, where the emergence principles of different energy supply schemes (like the energy source-specific photoautotrophy and substrate-specific chemoautotrophy) merge at the physicochemical level. The proposed integrating scheme is consistent with most biological, geological, and physicochemical concepts, which ensures its complete cross-checking and internal consistency.

show abstract