The right inferior frontal gyrus (rIFG) and the presupplementary motor area (pre-SMA) have been identified with cognitive controlthe top-down influence on other brain areas when nonroutine behavior is required. It has been argued that they "inhibit" habitual motor responses when environmental changes mean a different response should be made. However, whether such "inhibition" can be equated with inhibitory physiological interactions has been unclear, as has the areas' relationship with each other and the anatomical routes by which they influence movement execution. Paired-pulse transcranial magnetic stimulation (ppTMS) was applied over rIFG and primary motor cortex (M1) or over pre-SMA and M1 to measure their interactions, at a subsecond scale, during either inhibition and reprogramming of actions or during routine action selection. Distinct patterns of functional interaction between pre-SMA and M1 and between rIFG and M1 were found that were specific to action reprogramming trials; at a physiological level, direct influences of pre-SMA and rIFG on M1 were predominantly facilitatory and inhibitory, respectively. In a subsequent experiment, it was shown that the rIFG's inhibitory influence was dependent on pre-SMA. A third experiment showed that pre-SMA and rIFG influenced M1 at two time scales. By regressing white matter fractional anisotropy from diffusion-weighted magnetic resonance images against TMSmeasured functional connectivity, it was shown that short-latency (6 ms) and longer latency (12 ms) influences were mediated by cortico-cortical and subcortical pathways, respectively, with the latter passing close to the subthalamic nucleus.W e humans can engage in a complex repertoire of behaviors geared toward often far-removed goals. We have to override reflexive and habitual reactions to orchestrate behavior in accordance with our intentions. The mechanisms that allow us to act in this way are commonly referred to as "cognitive control processes," and their functions include controlling, and often preventing, lower level or more automatic sensory, memory, and motor operations (1). In the control of action, a network involving the presupplementary motor area (pre-SMA) and right inferior frontal gyrus (rIFG) has been commonly identified as crucial for the adaptation of actions to changes in the environment (2-10), a process we refer to as "action reprogramming" (6). The precise contributions of these regions, however, remain unknown. For example, at a cognitive level, the rIFG has been suggested to be involved in the inhibition of an incorrect motor program (2, 7). However, whether this cognitive inhibition is also reflected at a physiological level remains subject to investigation (8). Moreover, how each individual node of the cortical network exerts its influence and interacts with other nodes is unknown. Some authors have argued that interactions among cortical regions during action reprogramming occurs via direct cortical routes (11, 12), whereas others have argued for the involvement of subcortical routes,...