4FGL J0935.3+0901 is a γ-ray source detected by the Large Area Telescope (LAT) onboard the Fermi Gamma-Ray Space Telescope. We have conducted detailed analysis of the LAT data for this source and multi-wavelength studies of the source field. Its γ-ray emission can be described with a power law (Γ = 2.0 ± 0.2) with an exponential cutoff (E c = 2.9 ± 1.6 GeV), while the flux shows significant long-term variations. From analysis of archival Neil Gehrels Swift X-ray Telescope data, we find only one Xray source in the LAT's 2σ error region. Within a 3. ′′ 7 radius error circle of the X-ray source, there is only one optical object down to r ′ ∼23 mag. Time-resolved photometry of the optical object indicates a likely 2.5 hr periodic modulation, while its spectrum shows double-peaked hydrogen and helium emission lines (similar to those seen in accretion discs in low-mass X-ray binaries). Combining these results, we conclude that we have discovered a compact X-ray emitting binary in likely association with 4FGL J0935.3+0901, i.e., a millisecond pulsar (MSP) binary. We discuss the implication of the optical spectral features: this binary could be a transitional MSP system at a subluminous disc state, although the other possibility, the binary in a rotation-powered state showing the optical emission lines due to intrabinary interaction processes, can not be excluded. Further observational studies will help determine detailed properties of this candidate MSP binary and thus clarify its current state.