The -lactamase-producing Asia-type plasmid pJD4 of Neisseria gonorrhoeae is a 7.4-kb, broad-host-range plasmid. It is part of a family of plasmids which are structurally related yet vary in size, found in both N. gonorrhoeae and Haemophilus ducreyi. Branch-point analysis by electron microscopy indicates that pJD4 carries three clustered but distinguishable origins of replication, which we named ori1, ori2, and ori3. Although pJD4 belongs to incompatibility (Inc) group W, it also carries a silent IncFII determinant which is expressed when ori2 and ori3 are absent. The Africa-type plasmid pJD5, a naturally occurring deletion derivative of pJD4, carries only ori1, belongs to the IncFII group, and, in contrast to pJD4, requires DNA polymerase I (Pol I) for replication. Plasmids constructed from pJD4 which lack ori1 but carry ori2 and ori3 do not require Pol I and are incompatible with IncW plasmids, suggesting that the ori2 or ori3 region contains the IncW determinant. We have cloned a replication initiation protein (RepB) that is necessary for ori2 and ori3 to function. This Rep protein is distinct from RepA, which is necessary for ori1. Thus, pJD4 is unique because it is the smallest plasmid characterized containing three origins of replication and two unique Rep proteins.Plasmids of gram-negative bacteria containing three origins of replication are rare (1, 9, 23); to date, only three such naturally occurring plasmids have been described. The first plasmid discovered, F (94.5 kb), contains remnants of three independent replication regions, RepFIC, RepFIA, and RepFIB (3,8). A 9-kb mini-F plasmid, containing the complete RepF1A region, includes seven genes encoding proteins involved in the replication and maintenance of the plasmid, including a single replication initiation protein (Rep) and two origins, oriV and oriS (8). Related plasmids lacking the RepF1A region require RepF1B, a less stable replicon (27). The RepF1C replicon was shown to have been rendered nonfunctional on the F plasmid by the natural insertion of the transposon Tn1000 (25,40). This replicon, in members of the F plasmid family, resembles the replication region of the plasmid R1 (25). The IncN plasmid pCU1 contains three origins of replication (oriB, oriS, and oriV), all located on a 2-kb DNA fragment, which are driven by a single Rep protein (1, 38). The third and best-characterized plasmid with three origins (␣, , and ␥) is the 38-kb plasmid RK6. This plasmid also carries genes for two replication proteins, pir (encoding the protein for origins ␣ and ␥) and bis (Bis for origin ) (31). These origins and genes are located on a 4-kb DNA fragment (18, 31).It appears that the penicillinase-producing plasmids of N. gonorrhoeae contain different and multiple origins of replication as well. These plasmids belong to a family of plasmids that are genetically related (33). Since the isolation of the first penicillinase-producing isolate in 1976, their worldwide spread and prevalence (i.e., over 50 to 80% of all gonococci isolated in some countries) h...