The widespreading of gene therapy as therapeutic tool relies on the development of DNAcarrying vehicles devoid of safety concerns. Opposite to viral vectors, non-viral gene carriers are promising in this perspective, although their low transfection efficiency leads to the necessity of further optimizations. Aiming at overcoming the limitation of traditional macroscale approaches, mainly consisting in time-consuming and simplified models, a microfluidic strategy was developed for transfection studies on single cells in a highthroughput and deterministic fashion. A single cell trapping mechanism was implemented based on dynamic variation of fluidic resistances. At this purpose, we conceived a roundshaped culture chamber integrated with a bottom trapping junction which modulates the hydraulic resistance. Several layouts of the chamber were designed and computationally validated for the optimization of the single cell trapping efficacy. The optimized chamber layout was integrated in a polydimethylsiloxane (PDMS) microfluidic platform presenting two main functionalities: (i) 288 chambers for trapping single cells, (ii) a serial dilution generator provided with chaotic mixing properties, able to deliver to chambers both soluble factors and non-diffusive particles (i.e. polymer/DNA complexes, polyplexes) under spatio-temporally controlled chemical patterns. Devices were experimentally validated and allowed for trapping individual human glioblastoma-astrocytoma epithelial-like cells (U87-MG) with a trapping efficacy of about 40%. Cells were cultured within the device and underwent preliminary transfection experiments using 25kDa linear polyethylenimine (lPEI)-based polyplexes, confirming the potentiality of the proposed platform for the future high-throughput screening of gene delivery vectors and the optimization of transfection protocols.