The objective of the Pion Generation for Medical Irradiations (PIGMI) program at the Los Alamos Scientific Laboratory is to develop the technology to build smaller, less expensive, and more reliable proton linear accelerators for medical applications. For this program, we developed a powerful, simple, inexpensive, and reliable control and data acquisition system. The system has a NOVA 3D computer with a real time diskoperating system (RDOS) that communicates with distributed microprocessor-based controllers which directly control data input/output chassis. At the heart of the controller is a microprocessor crate which was conceived at the Fermi National Accelerator Laboratory. We applied this idea to the design of the hardware and software of the controller. •OMNIBYTE Corp.,