A mechanism of ACK1 activation in cancer via C‐terminal UBA domain truncation

Abstract

We recently developed a machine learning (ML) based program to predict cancer hotspots. Here, we applied the ML program to 32 non‐receptor tyrosine kinases (NRTKs) and identified 36 potential cancer driver mutations, with high probability mutations in 10 genes, including ABL1, ABL2, JAK1, JAK3, and ACK1. Interestingly among all the NRTKs, ACK1 is the only kinase that, when altered, shows a significant drop in overall survival, supporting the idea that ACK1 is an oncogenic tyrosine kinase. ACK1 is a member of the poorly understood ACK family of NRTKs that also includes TNK1. Although ACK1 is an established oncogene and high‐interest therapeutic target, the exact mechanism of ACK1 regulation is largely unknown and there is still no ACK1 inhibitor in clinical use. The ACK kinase family has a unique domain arrangement with, most notably, a predicted ubiquitin association (UBA) domain at its C‐terminus. The presence of a functional UBA domain on a kinase is unique to the ACK family, but the role of the UBA domain on ACK1 is unknown. Interestingly, the ML program identified the ACK1 UBA‐truncating mutation p633fs* as a cancer hotspot. Our preliminary data suggest that the ACK1 UBA domain helps activate full‐length ACK1 through induced proximity, but also acts as a mechanism of negative feedback by tethering ACK1 to ubiquitinated cargo that is ultimately degraded. Indeed, our preliminary data suggest that truncation of the ACK1 UBA stabilizes ACK1 protein levels, which results in spontaneous ACK1 oligomerization and activation. Thus, our data provide a model to explain how human mutations in ACK1 convert the kinase into an oncogenic driver.