A Look into Genetic Diversity of Enset (<i>Ensete ventricosum</i>(Welw.) Cheesman) Using Transferable Microsatellite Sequences of Banana in Ethiopia

Getachew, Selamawit; Mekbib, Firew; Admassu, Belayneh; Kelemu, Segenet; Kidane, Sisay; Negisho, Kefyalew; Djikeng, Appolinaire; Nzuki, Inosters

doi:10.1080/15427528.2013.861889

Cited by 18 publications

(24 citation statements)

References 32 publications

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“…This is similar to what has been reported based on SSR marker analysis of enset genetic diversity (Gerura et al , 2019), but differs from what has been reported by Olango et al (2015), which reported that higher gene diversity in cultivated enset population (0.59) than wild enset population (0.40), but similar hetrozygosity for cultivated and wild enset populatons (0.5). The genetic diversity for both cultivated and wild enset reported in the current study (Table 4) is lower than previous enset genetic diversity studies conducted using SSR makers (Getachew et al , 2014; Olango et al, 2015 ; Gerura et al , 2019). These differences and discrepancies might be due to the nature of the different types of markers used.…”

Section: Discussioncontrasting

confidence: 82%

“…Genetic analysis of intraspecific variation in enset has mainly relied upon data for ‘anonymous’ molecular markers, such as amplified fragment length polymorphisms (AFLP) (Tsegaye & Struik, 2002), random amplified polymorphic DNA (RAPD) (Birmeta et al, 2004), inter simple sequence repeats (ISSR) (Tobiaw & Bekele, 2013) and microsatellites (simple sequence repeat (SSR) polymorphisms (Getachew et al , 2014; Olango et al , 2015; Gerura et al , 2019). Given that enset is vegetatively propagated, genetic divergence among cultivars may be minimal (McKey et al, 2010) and could be difficult to detect using these marker types.…”

Section: Introductionmentioning

confidence: 99%

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Accumulation of mutations in genes associated with sexual reproduction contributed to the domestication of a vegetatively propagated staple crop, enset

Tesfamicael

Gebre²,

March

et al. 2020

Preprint

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23Enset (Ensete ventricosum (Welw.) Cheesman) is a drought tolerant, vegetatively propagated 24 crop that was domesticated in Ethiopia. It is a staple food for more than 20 million people in 25 Ethiopia. Despite its current importance and immense potential, enset is among the most 26 genetically understudied and underexploited food crops. We collected 230 enset wild and 27 cultivated accessions across the main enset producing regions in Ethiopia and applied amplified 28 fragment length polymorphism and genotype by sequencing (GBS) methods to these 29 accessions. Wild and cultivated accessions were clearly separated from each other, with 89 30 genes found to harbour SNPs that separated wild from cultivated accessions. Among these, 17 31 genes are thought to be involved in flower initiation and seed development. Among cultivated 32 accessions, differentiation was mostly associated with geographical location and with 33 proximity to wild populations. Our results indicate that vegetative propagation of elite clones 34 has favoured capacity for vegetative growth at the expense of capacity for sexual reproduction. 35This is consistent with previous reports that cultivated enset tends to produce non-viable seeds 36 and flowers less frequent than wild enset. 37

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Section: Discussioncontrasting

confidence: 82%

Section: Introductionmentioning

confidence: 99%

Accumulation of mutations in genes associated with sexual reproduction contributed to the domestication of a vegetatively propagated staple crop, enset

Tesfamicael

Gebre²,

March

et al. 2020

Preprint

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“…Only few reports used SSR markers for study in population of wild bananas such as M. balbisiana (Ge et al 2005) and Ensete ventricosum (Getachew et al 2014). None of them has validated markers to be used across the banana species diversity.…”

Section: Wild Banana Species Fingerprintingmentioning

confidence: 98%

Development of SSR markers from Musa balbisiana for genetic diversity analysis among Thai bananas

et al. 2016

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Bananas in Thailand have been surveyed by our team to be at least 140 cultivars in the plantations, 10 wild species and, 4 introduced species. To characterize the genetic relationship of species and cultivars, a set of novel SSR markers was developed. Totaling 53 clones containing SSR motifs were isolated from SSR-enriched library of wild Musa balbisiana Colla 'Tani' (BB). Selected positive clones were used to design 28 primer pairs for amplification of 12 wild and 82 cultivar accessions with genome designations AA, AB, AAA, AAB, ABB, and BBB. These SSR markers loci were homology searched to the banana genomes to map their locations. The seven-sets multiplex PCR approach using four fluorescent-labeled universal primers were utilized for cost effectiveness. Capillary fragment analysis yielded the accurate size of amplicons for evaluation of particular patterns for each cultivar. Phylogram and Structure analysis presented the specific genotype of genome groups (A and B genotypes, polyploid hybrid genomes) and cultivar groups. By A:B specific alleles ratio, accurate genome designations of hybrids can be determined. Additionally, a marker, characterized to be partial plastid ycf2 gene, indicated the maternal identification of hybrid cultivars. One SSR marker was also preliminary tested with some wild species and advised to be the candidate fingerprinting marker for species identification. In conclusion, SSR marker sets developed here proved their exploitation in detailed identity and relationship of cultivated bananas, which would be useful for genetic conservation and ongoing breeding programs in Thailand and other areas.

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“…Molecular markers are powerful tools in the assessment of genetic diversity which can assist the management of plant genetic resources [19,20]. Previous enset genetic diversity studies have used molecular techniques including ampli ed fragment length polymorphism (AFLP) [14], random ampli cation of polymorphic DNA (RAPD) [21], inter simple sequence repeat (ISSR) [22] and simple sequence repeat (SSR) [23]. SSR markers are highly polymorphic, co-dominant and the primer sequences are generally well conserved within and between related species [24].…”

Section: Resultsmentioning

confidence: 99%

The genotypic and genetic diversity of enset (Ensete ventricosum) landraces used in traditional medicine is similar to the diversity found in starchy landraces

Nuraga

Feyissa

Tesfaye

et al. 2020

Preprint

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Background Enset (Ensete ventricosum) is a multipurpose crop extensively cultivated in southern and southwestern Ethiopia for human food, animal feed and fiber. It contributes to the food security and rural livelihoods of 20 million people. Several distinct enset landraces are cultivated for their uses in traditional medicine. Socio-economic changes and the loss of indigenous knowledge might lead to the decline of important medicinal landraces and their associated genetic diversity. However, it is currently unknown whether medicinal landraces are genetically differentiated from other landraces. Here, we characterize the genetic diversity of medicinal enset landraces to support effective conservation and utilization of their diversity Results We evaluated the genetic diversity of 51 enset landraces of which 38 have reported medicinal value. A total of 38 alleles were detected across the 15 SSR loci. AMOVA revealed that 97.6% of the total genetic variation is among individual with an FST of 0.024 between medicinal and non-medicinal landraces. A neighbor-joining tree showed four separate clusters with no correlation to the use values of the landraces. Principal coordinate analysis also confirmed the absence of distinct clustering between the groups, showing low differentiation among landraces used in traditional medicine and those having other use values. Conclusion We found that enset landraces were clustered irrespective of their use value, showing no evidence for genetic differentiation between enset grown for ‘medicinal’ uses and non-medicinal landraces. This suggests that enset medicinal properties may be restricted to a more limited number of genotypes, a product of interaction with the environment or management practice, or partly misreported. The study provide baseline information that promotes further investigations in exploiting the medicinal value of these specific landraces

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A Look into Genetic Diversity of Enset (Ensete ventricosum(Welw.) Cheesman) Using Transferable Microsatellite Sequences of Banana in Ethiopia

Cited by 18 publications

References 32 publications

Accumulation of mutations in genes associated with sexual reproduction contributed to the domestication of a vegetatively propagated staple crop, enset

Accumulation of mutations in genes associated with sexual reproduction contributed to the domestication of a vegetatively propagated staple crop, enset

Development of SSR markers from Musa balbisiana for genetic diversity analysis among Thai bananas

The genotypic and genetic diversity of enset (Ensete ventricosum) landraces used in traditional medicine is similar to the diversity found in starchy landraces

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