The most abundant mismatch binding factor in human cells, hMutS␣, is a heterodimer of hMSH2 and hMSH6, two homologues of the bacterial MutS protein.The C-terminal portions of all MutS homologues contain an ATP binding motif and are highly conserved throughout evolution. Although the N termini are generally divergent, they too contain short conserved sequence elements. A phenylalanine 3 alanine substitution within one such motif, GXFY(X) 5 DA, has been shown to abolish the mismatch binding activity of the MutS protein of Thermus aquaticus (Malkov, V. A., Biswas, I., CameriniOtero, R. D., and Hsieh, P. (1997) J. Biol. Chem. 272, 23811-23817). We introduced an identical mutation into one or both subunits of hMutS␣. The Phe 3 Ala substitution in hMSH2 had no effect on the biological activity of the heterodimer. In contrast, the in vitro mismatch binding and mismatch repair functions of hMutS␣ were severely attenuated when the hMSH6 subunit was mutated. Moreover, this variant heterodimer also displayed a general DNA binding defect. Correspondingly, its ATPase activity could not be stimulated by either heteroduplex or homoduplex DNA. Thus the N-terminal portion of hMSH6 appears to impart on hMutS␣ not only the specificity for recognition and binding of mismatched substrates but also the ability to bind to homoduplex DNA.
Postreplicative mismatch repair (MMR)1 plays a key role in the maintenance of genomic integrity by eliminating base-base mismatches and insertion-deletion loops (IDLs) that arise in DNA during replication or recombination (1, 2). The repair process consists of four principal steps: (i) mismatch recognition, (ii) repairosome assembly, (iii) degradation of the newly synthesized strand from the strand discrimination signal to and past the mismatch, and (iv) resynthesis of the excised DNA tract (1). The mismatch recognition step is of particular interest; numerous in vitro and in vivo experiments, carried out over the past decade, have shown that the MMR system is capable of addressing a large number of substrates ranging from purine-pyrimidine, purine-purine, and pyrimidine-pyrimidine mismatches to IDLs of one to more than 10 extrahelical nucleotides (3-9). How are these various substrates recognized? In Escherichia coli the role of the mismatch recognition factor is played by a homodimer of the MutS protein, which can initiate the repair of base-base mismatches (5, 10) and IDLs up to four nucleotides (7). In human cells, this function is fulfilled by one of two heterodimers consisting of MutS homologues (MSH): hMutS␣, a heterodimer of hMSH2 and hMSH6 (11-13), which acts in the correction of base-base mismatches and small IDLs (8,12,14), and hMutS, a heterodimer of hMSH2 and hMSH3, which addresses principally IDLs (8, 14, 15). The situation in Saccharomyces cerevisiae is similar (16 -19).The highly conserved C termini of MutS homologue proteins contain the ATP binding sites as well as helix-turn-helix motifs (20 -22). As nucleotide binding alters the conformation of the DNA-bound factors, such that they...