A highly quality genome sequence of Penicillium oxalicum species isolated from the root of Ixora chinensis in Vietnam

Abstract

Penicillium oxalicum has been reported as a multienzyme producing fungus and is widely used in industry due to great potential for cellulase release. Until now, there are only ten available genome assemblies of P. oxalicum species deposited in the Genbank database. In this study, the genome of the I1R1 strain isolated from the root of Ixora chinensis was completely sequenced by Pacbio Sequel sequencing technology, assembled into eight chromosomes with the genome size of 30.8 Mb, as well as a mitogenome of 26 Kb. The structural and functional analyses of the I1R1 genome revealed gene model annotations encoding an enzyme set involved in significant metabolic processes, along with cytochrome P450s and secondary metabolite biosynthesis. The comparative analysis of the P. oxalicum species based on orthology and gene family duplications indicated their large and closed pan genome of 9,500 orthologous groups. This is valuable data for future phylogenetic and population genomics studies.