The Marine Microbial Food Web (MMFW) includes heterotrophic microbes and their protist and viral predators. These microbes consume dissolved organic matter thereby making the MMFW a major component of global biogeochemical and energy cycles. However, quantification of the MMFW contribution to these cycles is dependent on a handful of techniques, all of which require laboratory-derived conversion factors. Here we describe a differential calorimeter capable of measuring the small amounts of heat produced by marine microbes and viruses at natural populations. Using this ultra-sensitive calorimeter, we show that heat production in the presence of viruses is significantly larger than in their absence. This increased heat output occurs despite a net decrease in the number of microbes. This provides direct evidence for top-down control of microbial populations by viruses and shows that there is increased re-mineralization. A comparative statics model was developed to interpret the calorimeter measurements. The spirit of the model is thermodynamic -it restricts its view to net changes in the populations and net heat produced. The model predicts that approximately 25% of the total heat production during the growth phase of a pelagic microbial community is due directly to viral activities. This result has implications for the energy budget of our planet and for climate prediction.