Appendectomy is a frequently performed surgical procedure; however, long-term consequences have not been fully explored. We used a nationwide population-based cohort to determine whether patients undergoing appendectomy are at an increased risk of sepsis. Overall, 252,688 patients undergoing appendectomy and 252,472 matched controls were identified from the National Health Insurance Research Database in Taiwan. A propensity score analysis was used for matching age, sex, index year and comorbidities at a ratio of 1:1. Multiple Cox regression and stratified analyses were used to estimate the adjusted hazard ratio (aHR) of developing sepsis. Patients undergoing appendectomy had a 1.29 times (aHR: 1.29; 95% confidence interval [CI], 1.26-1.33) higher risk of developing sepsis than those not undergoing. Patients aged 20-49 years had a 1.58-fold higher risk of sepsis in the appendectomy cohort (aHR; 95% CI, 1.50-1.68). Also, having undergone appendectomy, patients had a higher likelihood of sepsis, regardless of sex and with or without comorbidities. Patients with <1 year follow-up showed a 1.98-fold risk of sepsis in the appendectomy cohort. Patients with 1-4 and ≥5 years follow-up showed a 1.29 and 1.11-fold risk of sepsis, respectively. Future research is required to elucidate the possible immuno-pathological mechanisms of these associations. Sepsis is a clinical heterogeneous syndrome that is defined as a 'life-threatening organ dysfunction caused by a dysregulated host response to an infection' 1,2. Sepsis and the subsequent systemic inflammatory response can lead to multiple organ dysfunction and even death 1. It remains a clinical challenge for clinicians and researchers. Appendectomy is one of the most frequently performed emergent abdominal procedures worldwide. However, it has recently been recognised that the appendix is not just a vestigial structure of the gut, but rather is an important organ for the development and preservation of the gut immune system 3,4. The human vermiform appendix provides a continuous source of commensal flora, thereby crowding out potentially unhealthy microorganisms, restoring diversity and stability of the gut microbiome and contributing to defensive immune mechanisms over a lifetime. Thus, it is known as a 'safe house' for normal gut flora. The appendix has been significantly associated with recurrent Clostridioides difficile infection 4 and recurrence of small bowel bacterial overgrowth after antibiotics administration 5. Studies have also examined the association between antecedent removal of the appendix and the risk of various diseases such as systemic lupus erythematosus 6 , rheumatoid arthritis 7 , inflammatory bowel disease 8 and cancers 9-11. These conditions reflect the important role of the appendix in microbial ecology and intestinal mucosal immunity.