A comprehensive compilation of 1001 nucleotide sequences coding for proteins from the yeast Saccharomyces cerevisiae (=ListA2)

Mossé, Marie-Odile; Linder, Patrick; Lazowska, Jaga; Słonimski, Piotr P.

doi:10.1007/bf00336752

Cited by 21 publications

(3 citation statements)

References 34 publications

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“…From this number, a total of more than 1,000 plasma membrane proteins can roughly be estimated to be present in S. cerevisiae (70,72). It is evident that several membrane protein-encoding genes are present in multiple copies (121), and not all these proteins will be expressed at the same time. The actual number of functional plasma membrane proteins will therefore be much smaller.…”

Section: Protein Content Of the Plasma Membranementioning

confidence: 99%

The plasma membrane of Saccharomyces cerevisiae: structure, function, and biogenesis.

Rest

Kamminga

Nakano

et al. 1995

Microbiological Reviews

203

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Section: Protein Content Of the Plasma Membranementioning

confidence: 99%

The plasma membrane of Saccharomyces cerevisiae: structure, function, and biogenesis.

Rest

Kamminga

Nakano

et al. 1995

Microbiological Reviews

203

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“…Duplicated sequences from the same gene or non allelic sequences from duplicated genes can be distinguished by comparing the 5′ and 3′ non-coding sequences, which in general diverge considerably in non allelic duplicated genes but are highly similar or identical in allelic sequences. Exceptions have been discussed (2). In both cases, the results of the comparisons are included in the commentary.…”

Section: Lista a Compilation Of Coding Sequencesmentioning

confidence: 99%

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Dolz¹

1996

Nucleic Acids Research

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We continued our effort to make a comprehensive database (LISTA) for the yeast Saccharomyces cerevisiae. As in previous editions the genetic names are consistently associated to each sequence with a known and confirmed ORF. If necessary, synonyms are given in the case of allelic duplicated sequences. Although the first publication of a sequence gives-according to our rules-the genetic name of a gene, in some instances more commonly used names are given to avoid nomenclature problems and the use of ancient designations which are no longer used. In these cases the old designation is given as synonym. Thus sequences can be found either by the name or by synonyms given in LISTA. Each entry contains the genetic name, the mnemonic from the EMBL data bank, the codon bias, reference of the publication of the sequence, Chromosomal location as far as known, SWISSPROT and EMBL accession numbers. New entries will also contain the name from the systematic sequencing efforts. Since the release of LISTA4.1 we update the database continuously. To obtain more information on the included sequences, each entry has been screened against non-redundant nucleotide and protein data bank collections resulting in LISTA-HON and LISTA-HOP. This release includes reports from full Smith and Watermann peptide-level searches against a non-redundant protein sequence database. The LISTA data base can be linked to the associated data sets or to nucleotide and protein banks by the Sequence Retrieval System (SRS). The database is available by FTP and on World Wide Web.

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“…In view of the very rapid growth of sequence data from genetic and biochemical experiments and systematic sequencing we continued to compile a list of coding sequences from yeast (1)(2)(3)(4). The database contains sequences from Saccharomyces cerevisiae, Saccharomyces carlsbergiensis and Saccharomyces uvarum, which are believed to constitute conspecific taxonomic species (5).…”

Section: Lista a Compilation Of Coding Sequencesmentioning

confidence: 99%

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Dölz¹,

Mossé

Słonimski

et al. 1994

Nucl Acids Res

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We continued our effort to make a comprehensive database (LISTA) for the yeast Saccharomyces cerevisiae. In this database each sequence has been attributed a single genetic name. In the case of duplicated sequences a simple method has been applied to distinguish between sequences of one and the same gene from non-allelic sequences of duplicated genes. If necessary, synonyms are given in the case of allelic duplicated sequences. Thus sequences can be found either by the name or by synonyms given in LISTA. Each entry contains the genetic name, the mnemonic from the EMBL data bank, the codon bias, reference of the publication of the sequence, Chromosomal location as far as known, Swissprot and EMBL accession numbers. To obtain more information on the included sequences, each entry has been screened against non-redundant nucleotide and protein data bank collections resulting in LISTA-HON and LISTA-HOP. The LISTA data base can be linked to the associated data sets or to nucleotide and protein banks by the Sequence Retrieval System (SRS).

show abstract

A comprehensive compilation of 1001 nucleotide sequences coding for proteins from the yeast Saccharomyces cerevisiae (=ListA2)

Cited by 21 publications

References 34 publications

The plasma membrane of Saccharomyces cerevisiae: structure, function, and biogenesis.

The plasma membrane of Saccharomyces cerevisiae: structure, function, and biogenesis.

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

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