Assembly of two orthologous proteins associated with meiotic chromosome axes in Arabidopsis thaliana (Asy1 and Zyp1) was studied immunologically at meiotic prophase of meiosis of wild-type rye (Secale cereale) and its synaptic mutant sy10, using antibodies derived from A. thaliana. The temporal and spatial expression of the two proteins were similar in wild-type rye, but with one notable difference. Unlike A. thaliana, in which foci of the transverse filament protein Zyp1 appear to linearize commensurately with synapsis, linear tracts of Asy1 and Zyp1 protein form independently at leptotene and early zygotene of rye and coalign into triple structures resembling synaptonemal complexes (SCs) only at later stages of synapsis. The sy10 mutant used in this study also forms spatially separate linear tracts of Asy1 and Zyp1 proteins at leptotene and early zygotene, and these coalign but do not form regular triple structures at midprophase. Electron microscopy of spread axial elements reveals extensive asynapsis with some exchanges of pairing partners. Indiscriminate SCs support nonhomologous chiasma formation at metaphase I, as revealed by multi-color fluorescence in situ hybridization enabling reliable identification of all the chromosomes of the complement. Scrutiny of chiasmate associations of chromosomes at this stage revealed some specificity in the associations of homologous and nonhomologous chromosomes. Inferences about the nature of synapsis in this mutant were drawn from such observations. T HE availability of advanced genomic and proteomic resources in tractable model organisms, such as yeast and Arabidopsis thaliana, has provided unprecedented access to the genes and proteins involved in the control of meiosis. This functional genomic infrastructure has also precipitated detailed comparisons of meiosis in closely and distantly related organisms, not only with the intention of isolating orthologs with key roles in the process, but also with the goal of assaying the degree of similarity of structure and function of key meiotic genes and proteins of organisms across the phylogenetic spectrum. Such comparisons have revealed that meiosis is conserved, insofar as a number of meiotic genes appear to have orthologs in a range of different organisms (for reviews see Zickler and