“…Mistletoes are key species in ecosystems (Watson, 2001); thus, most attention has focused on their ecological attributes (e.g., Martínez del Rio et al, 1996; Aukema, 2004; Watson, 2009). However, genetic structure and phylogenetic studies suggest that both ecological and historical processes can also influence mistletoes divergence at multiple scales through processes like postglacial dispersal from Pleistocene refugia (Amico and Nickrent, 2009), formation of host races (Glazner et al, 1988; Overton, 1997; Jerome and Ford, 2002; Zuber and Widmer, 2009), and landscape fragmentation (Stanton et al, 2009). Given the evidence of divergence along the Baja California Peninsula across several taxa according to the above‐mentioned literature and more recent studies (Smith et al, 2012; Garrick et al, 2013; Mantooth et al, 2013; Trujano‐Alvarez and Alvarez‐Castaneda, 2013; Dolby et al, unpublished manuscript), and considering the challenge of understanding how multiple biotic and abiotic factors might have influenced divergence in desert mistletoe, we investigated the extent to which historical, ecological, and geographic drivers can explain the observed patterns of intraspecific divergence.…”