New densitometer installation requires cross-calibration for accurate longitudinal assessment. When replacing a unit with the same model, ISCD recommends cross-calibrating by scanning phantoms 10 times on each instrument and states spine BMD should be within 1%, while total body lean, fat and %fat mass should be within 2% of the prior instrument. However, there is limited validation that these recommendations provide adequate total body cross-calibration. Here we report a total body cross-calibration experience with phantoms and humans.Cross-calibration between an existing and new Lunar iDXA was performed using three encapsulated spine phantoms (GE-Lunar, BioClinica and Hologic), one total body composition phantom (BioClinica) and 30 human volunteers. Thirty scans of each phantom and a total body scan of human volunteers were obtained on each instrument.All spine phantom BMD means were similar (within 1%; < −0.010 g/cm 2 bias) between the existing and new DXA unit. The BioClinica Body Composition Phantom (BBCP) BMD and BMC values were within 2% with biases of 0.005 g/cm 2 and −3.4g. However, lean and fat mass and %fat differed by 4.6 to 7.7% with biases of +463g, −496g and − 2.8%, respectively. In vivo comparison supported BBCP data; BMD and BMC were within ~2% but lean and fat mass and %fat differed from 1.6 to 4.9% with biases of +833g, −860g and −1.1%. As all body composition comparisons exceeded the recommended 2%, the new densitometer was recalibrated. Following recalibration, in vivo bias was lower (<0.05%) for lean and fat; −23g and −5g. Similarly, BBCP lean and fat agreement improved.In conclusion, the BBCP behaves similarly, but not identical, to human in vivo measurements for densitometer cross-calibration. Spine phantoms, despite good BMD and BMC agreement, did not detect substantial lean and fat differences observed using BBCP and in vivo assessments.Consequently, spine phantoms are inadequate for DXA whole body composition cross-calibration.