Sex-ratio distortion is the most common form of non-Mendelian segregation observed in natural populations. It may occur even more frequently than direct observations suggest, because the dysgenic population consequences of a biased sex ratio are expected to result in the rapid evolution of suppressors, resulting in suppressed or ''cryptic'' segregation distortion. Here we report evidence for cryptic sex-ratio distortion that was discovered by introgressing segments of the genome of Drosophila mauritiana into the genome of Drosophila simulans. The autosomal suppressor of sex-ratio distortion, which is also associated with a reduction in hybrid male fertility, has been genetically localized to a region smaller than 80-kb pairs in chromosome 3.M endelian segregation is the foundation of almost every important principle in population genetics theory. It is also widely observed. Examples of non-Mendelian segregation-also called segregation distortion or meiotic drive-though sometimes dramatic, are rare. However, the apparent nearuniversality of Mendelian segregation may be misleading. Nearly 50 years ago Sandler and Novitski (1) pointed out that new mutant alleles showing segregation distortion might occur frequently within populations, but be concealed by the fixation of suppressor mutations soon after the distorters arise. In this case, the infrequency of non-Mendelian segregation in natural populations would reflect only its transience as an evolutionary phenomenon, not its rarity as a biological phenomenon.A newly arisen segregation distorter can be fixed, lost, or become a stable polymorphism. Stable polymorphism may occur when the advantage of favored gametic transmission is balanced by lower fitness (2, 3) or suppressed by modifiers (4, 5). The evolution of modifiers of the degree of distortion depends on genetic linkage: loose linkage favors suppressors, tight linkage favors enhancers (6). Although much of our understanding of segregation distortion comes from two well studied autosomal systems, segregation distortion in Drosophila melanogaster (7) and the t-haplotype in Mus musculus (8), the multiple reports of sex-ratio distortion (9), as well as theoretical arguments (10, 11), suggest that segregation distortion of the sex chromosomes may evolve more readily than that of autosomes. Theory further suggests that the deleterious effect of a biased sex ratio results in rapid selection of Y-linked or autosomal suppressors (12, 13), thus rendering the distortion cryptic. Evidence bearing on the hypothesis that cycles of distortion and suppression may have happened multiple times in the evolutionary history of a species (14, 15) is scarce and controversial (16)(17)(18)(19)(20)(21)(22).There is a test of the distortion-suppression hypothesis. Among genetically isolated subpopulations, each would acquire its own independent sequence of distorters and suppressors, depending on the chance order of occurrence. Because the distorters present in any one subpopulation might not be affected by suppressor alleles present i...