Biomass of algae is a very potent adsorbent for absorbing liquid waste containing heavy metals and organic dyes. This study purposes to confirm the ability of adsorbents from green algae Nannochloropsis sp. modified with silica (ASN) and followed by coating magnetite particles (ASN-MPs) to absorb simultaneously the mixture of methylene blue (ME) and Cu(II) cations in aqueous solution. Simultaneous sorption of ME and Cu(II) cations to ASN and ASN-MPs was carried out by the Batch method with the interaction pH condition 7, contact time (15–120 minutes), and initial concentrations of ME and Cu(II) cations (0.1–1.0 mmol·L− 1). The simultaneous sorption parameters of ME and Cu(II) cations by ASN-MPs trend to comply the pseudo-second-order kinetics model by rate constant values for pseudo-second-order (k2), respectively 8.98 × 10− 3 and 9.78 × 10− 3 (g·mmol− 1·min− 1). The ME adsorption pattern and Cu(II) cations in the competition on ASN-MPs adsorbents, each tends to follow the Freundlich and Langmuir adsorption isotherms. Based on adsorption data, Cu(II) cations have a greater adsorption rate and capacity (qexp) compared to ME at the same contact time and initial concentration. Modified adsorbent from algae Nannochloropsis sp. with silica matrix and magnetite particle coating, is an adsorbent that has a high effectiveness in the collective sorption of ME and Cu(II) cations. Therefore, these adsorbents can be used for the adsorption of cation mixtures of heavy metals and organic dyes that are cationic in solution.